Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00936 ATGGTTGCCCTGAAGAAGGTACGATTTGACAAACTTAAAGATGATAGCATTAGGTTCATGGCAAGAGAAATAGTGATTCTTCGCTCACTTGACCACCCAAACATCATGAAATTGGATGGTATAATTACTTCACAACAATCAAACAACATATACCTTGTATTTGAATACATGGAGCATGACCTTGCTGGCCTAGTGGCTTCTCCTGATATAAAGTTCACTGGATCACAGATTAAGTGTTACATGAGACAGTTATTGAGTGGAATCGAGCATTGTCACCTTCGAGGTATTATGCATCGAGACATTAAAGTATCTAATATACTAGTGAACAATGAAGGTGTTCTCAAGATAGCAGATTTTGGATTAGCAAATACCCTTAGTCCTAATAGCAAGCAACCCTTAACAAGTCGAGTGGTGACTCTATGGTATCGTCCTCCTGAACTCTTAATGGGATCAACAAACTATGGTGTATCGGTGGATCTATGGAGTGTTGGCTGTGTATTTGCTGAACTTTTTCTGGGGAAGCCCATCCTTAAGGGGAAAACTGAGGTGGAACAATTACACAGAATTTTCAAGCTTTGCGGGTCTCCACCTGAGGAATACTGGAAAAAGAGTAAGCTTCCTCTGGCCACAATGTTTAAGCCTCAGACTAATTACGAAGCCTCTCTTCAAGAGAGGTGTAAAGGTTTTCCTGTAACTGCTGTAAAACTACTTGAGACTTTACTTTCCATTGATCCCTCCAAGCGTGGGACTGCCTCCTCTGCACTCACGTCTGAGTATTTCAGCACCAAGCCATATGCCTGTGATCCATCACTCATGCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAGAAATCGGGAAGAAGCGAGCAGGAAAAAGTCTTTAGGTAAAGGGAGAGAGGCTGCAACTTCAAAAAGGAATAGACGAGTCCACAAAGTTTCCCATGACCATATAAATTTCAACAAACCAGCTTGGAAAGAGATGCAGAATAGTTCTCAAAATATTGGCACAGGTGATGATGGTAGGGCACATGTTGCAAAAGTTAAAATAGGAGCTTTGCATAAAGAGCAACCAAAGGCTTCATGTGATGCAAAGTCTGAGGCTACCCAAGTGGTGGATGGTTGCAATGGAAACAGTTTATACTCTGGACCAGTACCAGTCTCAGCATCCAGTGGTTTTACATGGGCTAAAAGGAGAAAACCAGAAGCTTCATCCATATTGTCTGATGGTTCAAGAAGCAAAATCAGTGCTCTGGATCCAATCTTTGTAAAAGGCGCATGTGATTTAACAAAACATGAGATAGAAGTTTCAGAAAGGAAACATGGTTTCAACACAAGACATCAGGACAGGACTTTCAGCCATGTATTACCAATATACCCGGCTCCTCGCTTTCAACAAAAATCATTCGATTTAGCTGATAAATACAACTCAAATTATTTCATGGAATTTGATTTCACAGATAATTTTGATACTCTGTTAGATCAGGTAAGTTTGAAATCCTCAGTCGAATTTGAACACGTTTTATGA 1527 0.4054 MVALKKVRFDKLKDDSIRFMAREIVILRSLDHPNIMKLDGIITSQQSNNIYLVFEYMEHDLAGLVASPDIKFTGSQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNEGVLKIADFGLANTLSPNSKQPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGKTEVEQLHRIFKLCGSPPEEYWKKSKLPLATMFKPQTNYEASLQERCKGFPVTAVKLLETLLSIDPSKRGTASSALTSEYFSTKPYACDPSLMPKYPPSKEMDARNREEASRKKSLGKGREAATSKRNRRVHKVSHDHINFNKPAWKEMQNSSQNIGTGDDGRAHVAKVKIGALHKEQPKASCDAKSEATQVVDGCNGNSLYSGPVPVSASSGFTWAKRRKPEASSILSDGSRSKISALDPIFVKGACDLTKHEIEVSERKHGFNTRHQDRTFSHVLPIYPAPRFQQKSFDLADKYNSNYFMEFDFTDNFDTLLDQVSLKSSVEFEHVL 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00936 508 Gene3D Phosphorylase Kinase; domain 1 1 58 - -
Vimu6g00936 508 FunFam probable serine/threonine-protein kinase At1g54610 59 300 - -
Vimu6g00936 508 Gene3D Transferase(Phosphotransferase) domain 1 59 299 - -
Vimu6g00936 508 ProSiteProfiles Protein kinase domain profile. 1 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00936 508 PANTHER CELL DIVISION PROTEIN KINASE 1 264 - -
Vimu6g00936 508 CDD STKc_CDK9_like 1 260 - -
Vimu6g00936 508 MobiDBLite consensus disorder prediction 270 313 - -
Vimu6g00936 508 MobiDBLite consensus disorder prediction 279 303 - -
Vimu6g00936 508 SUPERFAMILY Protein kinase-like (PK-like) 1 266 IPR011009 -
Vimu6g00936 508 SMART serkin_6 1 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00936 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 96 108 IPR008271 GO:0004672|GO:0006468
Vimu6g00936 508 Pfam Protein kinase domain 2 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00936 Vimu-Chr6 10281991 10289162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00936 1 334 Core Cell Cycle Gene Families AT5G10270 43.875 2.19e-96 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vimu6g00936 Pkinase 2.4e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00936 - - vum:124825561 956.051