Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00933 ATGGGAGCCATCCCTGTTTATTCTCTGAACCCCTCCTTCATTTTAAAGGTTGGTTTGGATTGGATTATCAATCCCTTGCCCTCGAAGAAAAGTGCAGCTGGGGTGACATTTGGATTTATTTCAATATCATTTCCATTTTATGCTTGGATATACTTTTACTGGCCTGATTTTTATGTTGATTCTTCCACAAATTTCACTATAGATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTACTGGCCTCGACATGTTTCTACCAAATTATAAATTGGGAAAAACTCTTGGGATTGGATCTTTTGGGAAGGTGAAAATTGCAGAACATGTATTGACTGGTCATAAGTTTGCAATCAAGATCCTAAATCGGTGCAAGATAAAGAACATGGAAATGGAAGAAAAAGAAACTCCAACTGACATATTTGTTGTTATGGAGTATGCTTGTAGAGAGCTTTTTGATTACGTAATAGAAAAAGGAAGGTTAGAAGAAGACGAAGCTCGTAATATTTTTCAGCAGATAATCTCAGGAGTGGAGTATTGTCACAATAAGATGGTGGCTCATAGAGATTTGAAACCTGAAAACATACTTTTGGACTTCAATTGTGATGTCAAGATAACTGGTTTTGGCTGGAGCAACATCATGCATGCTGGTTACTTTCTTAAGACAAGTTGTGGAAGCCCTAACTATGCAGCTCCTGAGGTTATATGTGGAAAATTATATACTGGACCCGAAGTTGATGTATGGAGTTGTGGTGTAGTTCTGTATTTTATTCTTTGTGGATTTCTACCTTTTGACGATGAAAACATTCCAAATCTCTTCAACAAAATAAAGGGAGGAGTTTTCACCATTCCATGTTACCTATCTCCTGGAGCTAGAGATTTGATATCAAAGATGCTTGATGTGGAACCTATCAAAAGGATAACAGGTTCCTTTAATCTCAACGTTCCTCCTCAATCTCAAGCTCCGTTCACTCCAACACCACTAGGTGCTGTTGCTGCCTTCTTAAGTATTGCAGCTATTGTTCCGAGATTCCTAGAAACCCTCTTTAATAGGATGTCCAGGCTATTTGTTCTGGACGCGGATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTCGACATGTTTCTACCAAATTATAAATTGGGAAAAACTCTTGGGATTGGATCTTTTGGCAAGGTGAAAATTGCAGAACATGTATTGACTGGTCATAAGGTTGCAATCAAGATCCTAAATAGGCGCAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATACGACTTTATGAAGTCATAGAAACTCCATCTGACATATATGTTGTTATGGAGTATGTGAAATCTGGAGAGCTCTTTGATTACATAGTGGAGAAGGGTAGGTTGCAGGAAGATGAAGCTCGTAATTTTTTTCAACAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGATTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTCAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGTCACTTTCTCAAAACCAGTTGTGGAAGCCCTAACTATGCAGCTCCTGAGGTTATCTCCGGGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTTTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGGGTGGGATATACACCCTTCCCAGTCATCTATCACCTAGTGCTAGGGATTTGATACCAGGGATGCTTGTGGTTGATCCTATGAGGAGAATGACCATACCTGAGATACGTCAACACCCATGGTTCCAAGCTCGTCTTCCACGTTATTTGGCTGTGCCCCCGCCAGATACACTGCAACAGGCCAAAAAGATTGATGAGGAGATTCTTCAGGAAGTGGTGAAGATGGGATTTGACAGGAATCAATTGATTGAATCCCTTCGGAACAGGATACAAAATGAGGGTACTGTAGCATACTATTTGTTATTGGACAATCGATTCCGTGTTTCCAGTGGTTATCTTGGAGCTGAGTTTCAGGAGTCCATGAAACGAGACATTTTTCAGAAACAAGATATTATCCCTATGCAAACTGGGCTTTATGCTTGCTTGTTGCATTGGAAATGTGAGAAAAGGGGTGAAGTGAAGGGGGGAGAGCTTTGTAAAGAGCTTTCTAACAAGGTGGGAAAGGAGGAGGAAGAGGATTCCAGTTTTAACCAAATGCATTCCAGTGAAGTTGCTTCTTCAGTTGTTGGACAACGCTTTCCAGGCTATATGGATTATCCAGGAGTAGGATCGAGGCCACAATTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCATCCTCGAGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAGAGTTAAATGTTTGTTGGAAGAAAATTGGACACTACAACATGAAGTGCAGGTGGGTTGCTGCCATTCCTGGTCATCACGATGGAATGGTTAACAATAATGTGCACAGTAACAACCATTACTTTGGAGATGATTCCAACATTATTGAGAACGATGCTGTTTCTACTGCAAACGTGGTCAAATTTGAAGTTCAGCTTTACAAAACTCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGGGTCCACAGTTTCTTTTCTTGGATCTGTGTGCTGCCTTCCTTGCACAACTTCGAGTCCTCTAG 2787 0.408 MGAIPVYSLNPSFILKVGLDWIINPLPSKKSAAGVTFGFISISFPFYAWIYFYWPDFYVDSSTNFTIDLEMDGPAGRGGTGLDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKFAIKILNRCKIKNMEMEEKETPTDIFVVMEYACRELFDYVIEKGRLEEDEARNIFQQIISGVEYCHNKMVAHRDLKPENILLDFNCDVKITGFGWSNIMHAGYFLKTSCGSPNYAAPEVICGKLYTGPEVDVWSCGVVLYFILCGFLPFDDENIPNLFNKIKGGVFTIPCYLSPGARDLISKMLDVEPIKRITGSFNLNVPPQSQAPFTPTPLGAVAAFLSIAAIVPRFLETLFNRMSRLFVLDADLEMDGPAGRGGAGLDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPSDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPSARDLIPGMLVVDPMRRMTIPEIRQHPWFQARLPRYLAVPPPDTLQQAKKIDEEILQEVVKMGFDRNQLIESLRNRIQNEGTVAYYLLLDNRFRVSSGYLGAEFQESMKRDIFQKQDIIPMQTGLYACLLHWKCEKRGEVKGGELCKELSNKVGKEEEEDSSFNQMHSSEVASSVVGQRFPGYMDYPGVGSRPQFPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWVAAIPGHHDGMVNNNVHSNNHYFGDDSNIIENDAVSTANVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00933 928 ProSitePatterns Protein kinases ATP-binding region signature. 387 410 IPR017441 GO:0005524
Vimu6g00933 928 ProSiteProfiles Protein kinase domain profile. 381 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00933 928 SUPERFAMILY Protein kinase-like (PK-like) 86 312 IPR011009 -
Vimu6g00933 928 CDD UBA_SnRK1_plant 655 695 - -
Vimu6g00933 928 Gene3D Transferase(Phosphotransferase) domain 1 81 325 - -
Vimu6g00933 928 Gene3D Transferase(Phosphotransferase) domain 1 373 714 - -
Vimu6g00933 928 FunFam Non-specific serine/threonine protein kinase 372 711 - -
Vimu6g00933 928 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 879 927 IPR001772 -
Vimu6g00933 928 Pfam Protein kinase domain 134 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00933 928 Pfam Protein kinase domain 381 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00933 928 SUPERFAMILY UBA-like 644 692 IPR009060 GO:0005515
Vimu6g00933 928 SUPERFAMILY Protein kinase-like (PK-like) 378 648 IPR011009 -
Vimu6g00933 928 FunFam Maternal embryonic leucine zipper kinase 130 336 - -
Vimu6g00933 928 FunFam Non-specific serine/threonine protein kinase 808 926 - -
Vimu6g00933 928 CDD AMPKA_C 802 925 - -
Vimu6g00933 928 CDD STKc_AMPK_alpha 378 633 - -
Vimu6g00933 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Vimu6g00933 928 SMART serkin_6 89 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00933 928 SMART serkin_6 381 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00933 928 Pfam UBA/TS-N domain 655 691 IPR015940 -
Vimu6g00933 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Vimu6g00933 928 PANTHER SERINE/THREONINE KINASE 380 698 - -
Vimu6g00933 928 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Vimu6g00933 928 Pfam Kinase associated domain 1 885 927 IPR001772 -
Vimu6g00933 928 FunFam Non-specific serine/threonine protein kinase 374 460 - -
Vimu6g00933 928 Gene3D Kinase associated domain 1, KA1 808 926 - -
Vimu6g00933 928 SUPERFAMILY KA1-like 690 927 IPR028375 -
Vimu6g00933 928 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 654 694 IPR015940 -
Vimu6g00933 928 ProSiteProfiles Protein kinase domain profile. 89 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00933 928 SMART uba_6 656 693 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00933 Vimu-Chr6 10249002 10260150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00933 381 633 CBL-interacting serine-threonine protein kinases AT4G24400 51.575 1.97e-86 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Vimu6g00933 Pkinase 3.1e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00933 K07198 - gmx:100796687 989.178