Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00927 ATGGCAGCGTGCATAATCACGGTTTCAAAGGACGGAACCGCTGATTTCCTAACGGTGCAGGCGGCGATCGACGCCGTGCCGCTTGGCAACATTCGCCGGACGGTGATTCGGGTCTCGCCGGGAATCTACCGGCAGCCGGTGTACATCCCCAAGACCAAGAATTTCATCACTCTCGCTGCTATGTCCCCTGAGGACACTGTGCTTACCTGGAACAACACTGTCTCCGGAATCAATCACCATCAACCTGCGAGGATAATAGGAACTGGGACCTTCGGTTGTGGAAGTACCATTGTGGAAGGGGAGGACTTTATCGCTGAGAATATTACTTTTGAGAATTCTGCCCCTAAGGGTTCAGGTCAAGCAGTTGCAATTAGAGTAACAGCGGATCGATGTGCCTTCTACAATTGTAGGTTCCTTGGGTGGCAGGACACATTGTACTTACATTACGGTAAACAATATTTGAAAGATTGTTACATTGAAGGAAGTGTGGACTTCATCTTTGGCAATAGCACTGCACTTTTGGAGCATTGTCATATCCACTGCAAGTCTGAGGGCTTCATAACTGCACAGAGCAGAAAATCATCACAGGAAACAACTGGTTATGTATTCTTAAGATGCATTATCACAGGTAATGGAGGAAAATCGTATGCATATCTTGGACGACCGTGGGGCCCTTTTGGAAGGGTGGTTTTTGCATATACTTACATTGATGAGTGTATAAGACATGTTGGCTGGCATAACTGGGGGAACATGGAGAACGAGAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCATCGAAGCGAGTAACATGGTGTAGAGAATTGGTGGATGAAGAAGCTATGCAGTTCGTCACGCATCCTTTCATCGATCCCGAACCTGAGAAACCTTGGCTTGCTCAAAGGATGGCCCTCAGAATTCCGTATTCTGCATGA 951 0.4721 MAACIITVSKDGTADFLTVQAAIDAVPLGNIRRTVIRVSPGIYRQPVYIPKTKNFITLAAMSPEDTVLTWNNTVSGINHHQPARIIGTGTFGCGSTIVEGEDFIAENITFENSAPKGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSEGFITAQSRKSSQETTGYVFLRCIITGNGGKSYAYLGRPWGPFGRVVFAYTYIDECIRHVGWHNWGNMENERSACFYEYRCFGPGCCPSKRVTWCRELVDEEAMQFVTHPFIDPEPEKPWLAQRMALRIPYSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00927 316 Gene3D - 3 310 IPR012334 -
Vimu6g00927 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Vimu6g00927 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 298 - -
Vimu6g00927 316 FunFam Pectinesterase 2 309 - -
Vimu6g00927 316 Pfam Pectinesterase 6 296 IPR000070 GO:0030599|GO:0042545
Vimu6g00927 316 SUPERFAMILY Pectin lyase-like 2 298 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00927 Vimu-Chr6 10222409 10225366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00927 5 309 Carbohydrate Esterase AT5G47500 37.778 1.49e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00927 K01051 - gmx:100786786 635.18