Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00922 ATGTATCAAGTTATGACTAGTGTGAAAGCAGCTTGTGTGATGATGGAAGGAAGATTATCAGGTGTGAGGAAAGGAGCAGGTGTGAGGAAAGGAGCATGGAGTCAAAGTGAAGATGAGCTTCTCAGAGAATGCGTGCAACTCTATGGCGAAGGAAAGTGGCATCTTGTTCCTCAAAGAGCAGGGTTGAACAGATGTAGGAAGAGTTGTCGGTTGAGATGGTTGAACTATTTGAAACCAAATATCAAGAGAGGGGATTTTAGTGAAGACGAGGTCGATTTGATGATCAGATTGCATAAGCTTTTGGGGAACAGATGGTCTCTGATTGCAGGAAGACTTCCGGGAAGAACTTCAAACGATGTGAAGAATTACTGGAACACCAACATGCGCCGCAAAGTACAATCTCACAAGGAGAACAACAACAACAACAACGTTAAAGAATCCGAAACAACTTGGAAACCCCACCAAGTTATAAAGCCTGTGCCTCGAGCTTTGACAAAAGCATCGTCCATGGTGCATGGGAAATCGATGAACAGTTCGAAAGTTGGTGTTAATGAAACAGTTTCAGCAGAGTCTGAGAATTGGTGGGAAACTCTGTTAGATGATAAGGAAGAGAACATTACTTTTAACAACACCACGTGCTTCCCTGTTGAAAAAGATGGATCATTTGAACTTTGGGATGAAGAACTTGACTCCATTGCTTCTGAGTTTTTTGCAGAAGCTGAAACATGGAGCGATTTTCTTCTTAACTAA 750 0.4213 MYQVMTSVKAACVMMEGRLSGVRKGAGVRKGAWSQSEDELLRECVQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTNMRRKVQSHKENNNNNNVKESETTWKPHQVIKPVPRALTKASSMVHGKSMNSSKVGVNETVSAESENWWETLLDDKEENITFNNTTCFPVEKDGSFELWDEELDSIASEFFAEAETWSDFLLN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00922 249 Gene3D - 30 82 - -
Vimu6g00922 249 CDD SANT 32 77 IPR001005 -
Vimu6g00922 249 FunFam Transcription factor MYB113 85 156 - -
Vimu6g00922 249 SMART sant 82 130 IPR001005 -
Vimu6g00922 249 SMART sant 29 79 IPR001005 -
Vimu6g00922 249 Pfam Myb-like DNA-binding domain 30 77 IPR001005 -
Vimu6g00922 249 Pfam Myb-like DNA-binding domain 83 126 IPR001005 -
Vimu6g00922 249 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 26 186 - -
Vimu6g00922 249 SUPERFAMILY Homeodomain-like 27 124 IPR009057 -
Vimu6g00922 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 132 IPR017930 -
Vimu6g00922 249 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Vimu6g00922 249 FunFam Myb transcription factor 30 82 - -
Vimu6g00922 249 CDD SANT 86 128 IPR001005 -
Vimu6g00922 249 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Vimu6g00922 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 81 IPR017930 -
Vimu6g00922 249 Gene3D - 85 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00922 Vimu-Chr6 10201272 10202298 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00922 27 169 MYB Transcription Factor Family AT1G66370 60.403 9.87e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g00922 Myb_DNA-binding 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00922 - K16166 pvu:PHAVU_008G038600g 376.711