Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00920 ATGGAAGAATTATCAGGCGTGAGAAAAGGAGCATGGAGTAAATTTGAAGATGAACTTCTCAAAGCATGTGTTCATGTTTACGGGGAAGGACAATGGCACCTTGTTCCTCAGAGAGCAGGGTTGAAGAGATGCAGGAAGAGTTGTCGAGTGAGATGGCTAAACTATTTGAAACCAAATATCAAGCGAGGAGATTTTAGTGAAGATGAGGTTGATTTGATGATGAAATTGCATAAACTTTTGGGAAACAGGTGGTCCCTGATTGCAGGAAGACTTCCGGGAAGAACTTCGAACGATGTGAAGAATTACTGGAACACCTACACACGACGACGTAAATCGCACTCTCAAAACAAACATAACAACGTAAAATCCCATGAAGTTGTAAAACCTGTGCCTCTAGCTTTATCAAAGACTTATCCTAAGTTACTGCAAGAGAAATTTATAAATAGTTCAAAAGTTGGTGTATTTGAAGAAGGAACAAGTTCTTTATCTGGGTCTGAGAATCGGTTTGAAACTTTGTTAGATGAGAAGGGAAAGAATATTACAGTTAACAACAAGACATGCTTCTTTGCAGAAAAAGATGGAGTGTTTGAACAGTGGGATGAAGAGCTTAGTTCAATTGCTTCTCACTTTCTTACAGAATGTGAAACTTGGACCGATATGTTTCTTGACCTGGAAATTAATTAG 684 0.386 MEELSGVRKGAWSKFEDELLKACVHVYGEGQWHLVPQRAGLKRCRKSCRVRWLNYLKPNIKRGDFSEDEVDLMMKLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTYTRRRKSHSQNKHNNVKSHEVVKPVPLALSKTYPKLLQEKFINSSKVGVFEEGTSSLSGSENRFETLLDEKGKNITVNNKTCFFAEKDGVFEQWDEELSSIASHFLTECETWTDMFLDLEIN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00920 227 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Vimu6g00920 227 CDD SANT 65 106 IPR001005 -
Vimu6g00920 227 Gene3D - 9 61 - -
Vimu6g00920 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Vimu6g00920 227 SMART sant 8 58 IPR001005 -
Vimu6g00920 227 SMART sant 61 109 IPR001005 -
Vimu6g00920 227 CDD SANT 11 56 IPR001005 -
Vimu6g00920 227 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vimu6g00920 227 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Vimu6g00920 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Vimu6g00920 227 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 124 - -
Vimu6g00920 227 Gene3D - 64 125 - -
Vimu6g00920 227 FunFam Myb transcription factor 9 61 - -
Vimu6g00920 227 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vimu6g00920 227 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00920 Vimu-Chr6 10178757 10182065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00920 2 135 MYB Transcription Factor Family AT1G66370 57.534 1.37e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g00920 Myb_DNA-binding 3.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00920 - K16166 gmx:100778957 318.161