Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00918 ATGGAAGGAAGATTATCAGGTGTGAGGAAAGGAGCATGGAGTCACACTGAAGATGAGCTTCTCAGAGAATGTGTGCAACTCTATGGCGAAGGAAAGTGGCATCTTGTTCCTCAAAGAGCAGGGTTGAACAGATGCAGGAAGAGTTGTCGGTTGAGATGGTTGAACTATTTGAAACCAAATATCAAGAGAGGGGATTTTAGTGAAGACGAGGTCGATTTGATGATCAGATTGCATAAGCTTTTGGGGAACAGATGGTCTCTGATTGCAGGAAGACTTCCGGGAAGAACTTCAAACGATGTGAAGAATTACTGGAATACCAACATGCGCCGCAAAGTACAATCTCACAAGGAGAACAACAACAACAACGTTAAAGAATCCGAAACAACTTGGAAACCCCACCAAGTTATAAAGCCTGTGCCTCGAGCTTTGACAAAAGCATCGTCCATGGTGCATGGGAAAACAATGAGCAGTTCGAAAGTTGGTGTTAGTGAAGGAGTTTCAACAGGGTCTGAGAATTGGTGGGAAACTCTGTTAGATGATAAGGAAGATAACATTACTTTTAACAACACCACGTGCTTCCCTGTTGAAAATGATGGATCATTTGAGCTTTGGGATGAAGAACTTGACTCCATTCCTACTGAGTTTCTTGCAGAAGCTGAAACATGGAGCGATTTTCTTCTTAACTAA 687 0.425 MEGRLSGVRKGAWSHTEDELLRECVQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTNMRRKVQSHKENNNNNVKESETTWKPHQVIKPVPRALTKASSMVHGKTMSSSKVGVSEGVSTGSENWWETLLDDKEDNITFNNTTCFPVENDGSFELWDEELDSIPTEFLAEAETWSDFLLN 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00918 228 SMART sant 62 110 IPR001005 -
Vimu6g00918 228 SMART sant 9 59 IPR001005 -
Vimu6g00918 228 Gene3D - 10 62 - -
Vimu6g00918 228 CDD SANT 12 57 IPR001005 -
Vimu6g00918 228 CDD SANT 66 108 IPR001005 -
Vimu6g00918 228 Gene3D - 65 136 - -
Vimu6g00918 228 FunFam Transcription factor MYB113 65 135 - -
Vimu6g00918 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Vimu6g00918 228 FunFam Myb transcription factor 10 62 - -
Vimu6g00918 228 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vimu6g00918 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
Vimu6g00918 228 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vimu6g00918 228 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 149 - -
Vimu6g00918 228 SUPERFAMILY Homeodomain-like 7 104 IPR009057 -
Vimu6g00918 228 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Vimu6g00918 228 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00918 Vimu-Chr6 10141341 10142315 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00918 7 148 MYB Transcription Factor Family AT1G66370 60.959 1.30e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g00918 Myb_DNA-binding 6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00918 - K16166 pvu:PHAVU_008G038600g 372.089