Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00909 ATGCGTGCAACTTTATGGCGAAGGAAAGTGGCATCTTGTTCCTCAAAGAGCAGGTGGTCTCTGATTGCAGGAAGACTTCCGGGAAGAACTTCAAATGATGTGAAGAATTATTGGAACACCAACATGCGCCGCAAAGTACAAGCTCACAACAGAGGTGAGGAGAACAACAACAACGTTAAAGAATCCGAAACAACTTGGAAACCCCACAAAGTGATAAAGCCTGTGCCTCGAGCTTTGACAAAAGCATCGTCCATGGTGCATGGGAAATCGATGAGCAGTTCGAAAGTTGGTGTTAGTAAAGGAGTTTCAGCAGCGTCTGAGAATTGGTGGGAAACTCTGTTAGATGATAAGGAAGAGAACATTACTTTTAACAACACCACGTGCTTCCCTGTTGAAAAAGATGGATCATTTGAGCTTTGGGATGAAGAACTTGACTCCATTCCTACTGAGTTTTTTGCAGAAGCTGAAACATGGACTGATTTTCTTCTTAACTAA 495 0.4283 MRATLWRRKVASCSSKSRWSLIAGRLPGRTSNDVKNYWNTNMRRKVQAHNRGEENNNNVKESETTWKPHKVIKPVPRALTKASSMVHGKSMSSSKVGVSKGVSAASENWWETLLDDKEENITFNNTTCFPVEKDGSFELWDEELDSIPTEFFAEAETWTDFLLN 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00909 164 CDD SANT 18 42 IPR001005 -
Vimu6g00909 164 Pfam Myb-like DNA-binding domain 17 40 IPR001005 -
Vimu6g00909 164 ProSiteProfiles Myb-like domain profile. 18 42 IPR001005 -
Vimu6g00909 164 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 17 95 - -
Vimu6g00909 164 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 46 IPR017930 -
Vimu6g00909 164 MobiDBLite consensus disorder prediction 46 65 - -
Vimu6g00909 164 SUPERFAMILY Homeodomain-like 15 50 IPR009057 -
Vimu6g00909 164 Gene3D - 4 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00909 Vimu-Chr6 10027650 10028955 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00909 18 75 MYB Transcription Factor Family AT4G09460 46.552 6.14e-13 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu6g00909 Myb_DNA-binding 5.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00909 - K09422 pvu:PHAVU_008G038600g 206.453