Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00906 ATATATATACTTTGTGTGATGATGGAAGGAAGATTATCAGGTGTGAGGAAAGGAGCATGGAGTCACACTGAAGATGAGCTTCTCAGAGAATGTGTGCAACTCTACGGCGAAGGAAAGTGGCATCTTGTTCCTCAAAGAGCAGGGTTGAACAGATGCAGGAAGAGTTGTCGGTTGAGATGGTTGAACTATTTGAAACCAAATATCAAGAGAGGGGATTTTAGTGAAGACGAGGTTGATTTGATGATCAGATTGCATAAGCTTTTGGGGAACAGATGGTCTCTGATTGCAGGAAGACTTCCGGGAAGAACTTCAAACGATGTGAAGAATTACTGGAACACCAACATGCACCGCAAAGTACAATCTCACAAGGAGAACAACAACAACAACGTTAAAGAATCCGAAACAACTTGGAAACCGCACCAAGTTATAAAGCCTGTACCTCGAGCTTTGACAAAAGCATCGTCCATGGTGCATGGGAAATCGATGAGCAGTTCGAAAGTTGGTGTTAGTGAAGGAGTTTCAGCAGCGTTTGAGAATTGGTGGGAAACTCTGTTAGATGATAAGGAAGAGAACATTACTTTTAACAACACCACGTGCTTCCCTGTTGGAAAAGATGAATCATTTGAGCTTTGGGATGAAGAACTTGACTCCATTCCTACTGAGTGTTTTGCAGATGCTGAAACATGGAACGATTTTCTTCTTAACTAA 708 0.4195 IYILCVMMEGRLSGVRKGAWSHTEDELLRECVQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTNMHRKVQSHKENNNNNVKESETTWKPHQVIKPVPRALTKASSMVHGKSMSSSKVGVSEGVSAAFENWWETLLDDKEENITFNNTTCFPVGKDESFELWDEELDSIPTECFADAETWNDFLLN 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00906 235 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Vimu6g00906 235 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Vimu6g00906 235 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Vimu6g00906 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Vimu6g00906 235 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 13 152 - -
Vimu6g00906 235 FunFam Transcription factor MYB113 72 142 - -
Vimu6g00906 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Vimu6g00906 235 CDD SANT 19 64 IPR001005 -
Vimu6g00906 235 Gene3D - 17 69 - -
Vimu6g00906 235 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Vimu6g00906 235 CDD SANT 73 115 IPR001005 -
Vimu6g00906 235 FunFam Myb transcription factor 17 69 - -
Vimu6g00906 235 Gene3D - 71 143 - -
Vimu6g00906 235 SMART sant 69 117 IPR001005 -
Vimu6g00906 235 SMART sant 16 66 IPR001005 -
Vimu6g00906 235 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00906 Vimu-Chr6 9972357 9973359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00906 14 155 MYB Transcription Factor Family AT1G66370 60.959 1.95e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g00906 Myb_DNA-binding 6.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00906 - K16166 pvu:PHAVU_008G038600g 349.747