Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00904 ATGGGACGATCACCATGCTGTGACAAGGTGGGGCTAAAGAAAGGGCCATGGACTCCAGAGGAAGATCAGAAGCTCTTGGCATATATTGAAGAACACGGCCACGGAAGCTGGCGTGCTTTGCCAGCAAAAGCTGGTAATCTTGTGTATATGTTGATGTGTGGCAAGAGCTGCAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGTATGCAAGAAGAACAAACCATCATTCAACTCCATGCACTCTTAGGGAACAGGTGGTCGGCAATAGCAACACATTTGCCAAAGAGAACAGATAATGAGATAAAGAACTACTGGAACACGCATCTGAAGAAAAGGTTAGACAAAATGGGAATTGATCCGGTGACTCACAAGCCCAAGAACGATGCCATTCTCTCCACTGAGGGCCATTCCAAGAGTGCATCCAACCTAAGCCACATGGCTCAGTGGGAGAGTGCCAGACTCGAAGCAGAAGCAAGATTGGTTAGAGAATCAAAACTACGTACCTCATATTCATCATCACCCTCATTGCAGCATTCTCTAATTGGCACTTCTGCATCATCATCGTCGTCTTCAGCTCCACTCTTACCCTCCTCAACACGTTCTCTTGATCACGCTTGGAACAATGGTAGTAGTACTAGTACGGTTGCAACCAGGGTCAGTGACCTTGAGTCACCTACTTCTACCTTATCTGAGAACAATGCACCACCAGTTATGACTAGTGTGATTGAGTTTGTTGGTTCTTCTGAGAGAGCGATGGTGAAGGAAGAAGGAGAGCGAGAATGGAACAAAGGTTTTCATGAAAGCTCCACCCATTTGGGAGAATACAAAGATGGCATGGAGAATTCCATGCCCTTCACGTCTAGTCTGCATGAGTTGACAGTGAGCATGGCAACCACGTGGGGTTCCGGCACTACCAGTGCACATGAGCATGGACATGTTTCTGAGGAGGGATTCACGAACCTTTTACTGAATTCTAATTCCGATCACCGGAGTTTGTCGCCGGAGGGTGGTGGAGAGTCTAATAATAATTGTCTGGGTAATGGTAGTGATGGTCATAACAATGGTAACGATAACGAGTTATACGAAGATAACAAGATGTATTGGAACAGCATTCTTAATTTGATGAACTGTTCTTCCCCTTCGAATTCACCCATGTTCTGA 1182 0.4552 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGNLVYMLMCGKSCRLRWTNYLRPDIKRGKFSMQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLDKMGIDPVTHKPKNDAILSTEGHSKSASNLSHMAQWESARLEAEARLVRESKLRTSYSSSPSLQHSLIGTSASSSSSSAPLLPSSTRSLDHAWNNGSSTSTVATRVSDLESPTSTLSENNAPPVMTSVIEFVGSSERAMVKEEGEREWNKGFHESSTHLGEYKDGMENSMPFTSSLHELTVSMATTWGSGTTSAHEHGHVSEEGFTNLLLNSNSDHRSLSPEGGGESNNNCLGNGSDGHNNGNDNELYEDNKMYWNSILNLMNCSSPSNSPMF 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00904 393 CDD SANT 73 116 IPR001005 -
Vimu6g00904 393 Gene3D - 13 70 - -
Vimu6g00904 393 MobiDBLite consensus disorder prediction 331 362 - -
Vimu6g00904 393 SMART sant 70 118 IPR001005 -
Vimu6g00904 393 SMART sant 13 67 IPR001005 -
Vimu6g00904 393 MobiDBLite consensus disorder prediction 179 241 - -
Vimu6g00904 393 FunFam Transcription factor MYB39 72 140 - -
Vimu6g00904 393 MobiDBLite consensus disorder prediction 125 151 - -
Vimu6g00904 393 Gene3D - 73 146 - -
Vimu6g00904 393 FunFam MYB-related transcription factor 13 70 - -
Vimu6g00904 393 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Vimu6g00904 393 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
Vimu6g00904 393 Pfam Myb-like DNA-binding domain 14 65 IPR001005 -
Vimu6g00904 393 SUPERFAMILY Homeodomain-like 11 112 IPR009057 -
Vimu6g00904 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Vimu6g00904 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vimu6g00904 393 CDD SANT 16 65 IPR001005 -
Vimu6g00904 393 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Vimu6g00904 393 MobiDBLite consensus disorder prediction 331 365 - -
Vimu6g00904 393 ProSiteProfiles Myb-like domain profile. 9 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00904 Vimu-Chr6 9941956 9944658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00904 1 393 MYB Transcription Factor Family AT3G01140 51.351 5.08e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g00904 Myb_DNA-binding 7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00904 K09422 - gmx:100794047 627.091