Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00900 ATGCTTTTGTGGTGTGTAGCAATTAAGTTGATGTTGACTCTCCTCTATTTATTCCTTTCCAATTTCCCCTTCCATTTCCACAAACAACTTCCTTCAAGGGAAATGGCTCTTCTTGGATTTCTTCTGGGACTTTTCTACATGGTGTCACATGTCAAGGGCTACGGGGGTTGGACCAATGCACACGCCACTTTCTATGGAGGAGGTGACGCTTCTGGGACAATGGGAGGGGCCTGTGGTTATGGAAATCTGTATAGCCAGGGTTATGGAACTGATACAACAGCACTGAGCACTGCACTGTTCAACAATGGTCTGAGCTGTGGTGCATGCTTTGAAATCAAATGTGTGAATGACCCACAATGGTGTCTTCCTGGATCCATCGTTGTCACTGCCACAAATTTCTGTCCACCCGGTGGTTGGTGTGACCCTCCCCAACACCACTTTGATCTGTCTCAACCTGTTTTCCAGCACATTGCTCAATATAGGGCCGGAATTGTTCCTGTAGTTTACAGAAGGGTGAGATGCAGGAGAAAGGGTGGAATCAGGTTCACCATCAATGGCCACTCTTACTTCAATTTAGTCCTTGTGACCAATGTTGGAGGTGCTGGTGATGTGCATTCTGTGTCCATCAAAGGGTCAAGAACCAGATGGCAAGCCATGTCTAGGAACTGGGGGCAAAACTGGCAAAGCAACTCCTACTTGAATGGGCAAAGCCTTTCCTTTGTAGTGACCACTGGCAACGGACACAGTGTGGTGTCATACAATGTTGCTCCAGCCGGTTGGTCCTTTGGGCAGACCTACACTGGAAGGCAGTTCAACTACTAA 822 0.4769 MLLWCVAIKLMLTLLYLFLSNFPFHFHKQLPSREMALLGFLLGLFYMVSHVKGYGGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTTALSTALFNNGLSCGACFEIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPQHHFDLSQPVFQHIAQYRAGIVPVVYRRVRCRRKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSVVSYNVAPAGWSFGQTYTGRQFNY 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00900 273 FunFam Expansin 47 175 - -
Vimu6g00900 273 Gene3D - 179 271 IPR036749 -
Vimu6g00900 273 CDD DPBB_EXPA_N 56 164 - -
Vimu6g00900 273 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Vimu6g00900 273 PRINTS Expansin/Lol pI family signature 96 114 IPR007118 GO:0005576
Vimu6g00900 273 PRINTS Expansin/Lol pI family signature 162 178 IPR007118 GO:0005576
Vimu6g00900 273 PRINTS Expansin/Lol pI family signature 56 71 IPR007118 GO:0005576
Vimu6g00900 273 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Vimu6g00900 273 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Vimu6g00900 273 SMART dpbb_1 92 169 IPR007112 -
Vimu6g00900 273 Pfam Lytic transglycolase 92 169 IPR009009 -
Vimu6g00900 273 PRINTS Expansin signature 137 154 IPR002963 GO:0009664
Vimu6g00900 273 PRINTS Expansin signature 87 101 IPR002963 GO:0009664
Vimu6g00900 273 PRINTS Expansin signature 114 125 IPR002963 GO:0009664
Vimu6g00900 273 PRINTS Expansin signature 254 270 IPR002963 GO:0009664
Vimu6g00900 273 PRINTS Expansin signature 126 136 IPR002963 GO:0009664
Vimu6g00900 273 PRINTS Expansin signature 154 167 IPR002963 GO:0009664
Vimu6g00900 273 PRINTS Expansin signature 178 190 IPR002963 GO:0009664
Vimu6g00900 273 PRINTS Expansin signature 190 211 IPR002963 GO:0009664
Vimu6g00900 273 PRINTS Expansin signature 225 246 IPR002963 GO:0009664
Vimu6g00900 273 FunFam Expansin 179 271 - -
Vimu6g00900 273 Pfam Expansin C-terminal domain 180 257 IPR007117 -
Vimu6g00900 273 Gene3D - 46 175 IPR036908 -
Vimu6g00900 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 75 179 IPR007112 -
Vimu6g00900 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 268 IPR007117 -
Vimu6g00900 273 PANTHER EXPANSIN-A15 40 271 IPR002963 GO:0009664
Vimu6g00900 273 SUPERFAMILY PHL pollen allergen 176 268 IPR036749 -
Vimu6g00900 273 SUPERFAMILY Barwin-like endoglucanases 56 197 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00900 Vimu-Chr6 9883946 9886643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00900 34 271 Expansin Gene Family AT2G03090 77.419 7.18e-138 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00900 K20628 - gmx:100791784 514.227