Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00896 ATGGAACAGTTGTATCAATCCCTTCTGCTCCTGTTTGTGTCTCTCATCCCACTCTCATTTTTCTTCCTTTTCTACAGGCATAAGGCTCAGTCCTCCGTATCCAACTTGCCACCGGGAAATATGGGGTTTCCGGTGGTCGGCGAGAGCATTGAGTTTATATCATTATGGTGGAAAGGGAATCCAGAGAAGTTCATATACGAACGCATGGCAAAATACTCTTCTAAAGTGTTCAAGACCTCTATCTTTGGGCAGAATACAGTGATGGCCTGTGGAGCCGCATGCAACAAGTTCTTGTTCTCGAACGAAAACAAACTGGTCATGTTTTGGTGGCCAGATAATGTGAACAAGATATTCCCATCCACGCTTGAAAGCAACAGTAGTGGTGAAGGCAAGAAATTGAGGAACATGCTCCCTCGGTTCCTCAGCGCCCAGGGCCTCCAAAGTTACATCGGTATCATGGACTACGTTGCCCAAAATCACTTTGCTTTGGATTGGGAGAACAACACCTCTGTTACCGTGCTCCCCTTGGCCAAAAGGTATACCTTCTGGGTGGCTTGCCGTTTGTTTATCGACGTTGATGATCCGATCCTTGCGGAAAATCTTTTCGAGTCTTTCAATAGAATAGCCCCAGGAATCATGTCAATGCCCATTGACTTGCCTGGAACTCCGTTCAACAAAGCCATCAAGGCCTCCAAGTTCATTAAGGAGAAGCTGTTGAAAATTATCAGACAGAGGAAAAAGGAACTGGCCAATGGAACAGTCTCACAAACTAAGGATATTTTGTCTCACATGTTATCATCATGCGATGAGAATGGACAATATATGACTGAACAAGATATTGCTGACAAGATGATTGCCCTGTTGCTAGGAGGCCACGACACTGCAAGTTCTGTATGCACTTTTATCGTCAAATACCTCGCTGAGATCCCTCCCAATATTTATGAAAATGTCTATCAGGAACAAATGGAGATTGCAAAATCGAAAGCTCCGGGAGAATTGTTGAATTGGAATGACATCCAGAAGATGAAATATTCGTGGAATGTTGCTTGTGAAGTAATGAGACTTGCGCCTCCACTCCAGGGTGCTTTCAGGGAAGCCATGGATGACTTTGTGTTAAATGGATTCTCAATTCCAAAAGGCTGGAAGTTGTATTGGAGTACAAGTTCAACACACAGGAATCCAGAGTGCTTCGCAGAGCCAGAGAATTTTGATCCGAGTAGATTTGAAGGAAAAGGACCAGCTCCTTATACTTATGTGCCATTTGGAGGAGGGCCAAGGATGTGTCCTGGAAAAGAGTATGCTCGAATGGAAATATTGGTGTTCATGCACAACTTGGTCAAAAGGTTCAAATGGGAAGCCATTATTCCTGATGAAAATATTTTTTATGATCCCACGCCTGTTCCTGCCAAAGGCCTTCCTGTTCGTCTTTATCCTCACCAACCTTGA 1446 0.4419 MEQLYQSLLLLFVSLIPLSFFFLFYRHKAQSSVSNLPPGNMGFPVVGESIEFISLWWKGNPEKFIYERMAKYSSKVFKTSIFGQNTVMACGAACNKFLFSNENKLVMFWWPDNVNKIFPSTLESNSSGEGKKLRNMLPRFLSAQGLQSYIGIMDYVAQNHFALDWENNTSVTVLPLAKRYTFWVACRLFIDVDDPILAENLFESFNRIAPGIMSMPIDLPGTPFNKAIKASKFIKEKLLKIIRQRKKELANGTVSQTKDILSHMLSSCDENGQYMTEQDIADKMIALLLGGHDTASSVCTFIVKYLAEIPPNIYENVYQEQMEIAKSKAPGELLNWNDIQKMKYSWNVACEVMRLAPPLQGAFREAMDDFVLNGFSIPKGWKLYWSTSSTHRNPECFAEPENFDPSRFEGKGPAPYTYVPFGGGPRMCPGKEYARMEILVFMHNLVKRFKWEAIIPDENIFYDPTPVPAKGLPVRLYPHQP 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00896 481 CDD CYP90-like 68 478 - -
Vimu6g00896 481 SUPERFAMILY Cytochrome P450 34 478 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00896 481 Pfam Cytochrome P450 37 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00896 481 PRINTS P450 superfamily signature 290 307 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00896 481 PRINTS P450 superfamily signature 347 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00896 481 PRINTS P450 superfamily signature 428 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00896 481 PRINTS P450 superfamily signature 419 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00896 481 PANTHER CYTOCHROME P450 26 34 468 - -
Vimu6g00896 481 Gene3D Cytochrome P450 25 478 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00896 481 FunFam Taxadiene 5-alpha hydroxylase 27 479 - -
Vimu6g00896 481 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 421 430 IPR017972 GO:0005506|GO:0016705
Vimu6g00896 481 PRINTS E-class P450 group I signature 386 410 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00896 481 PRINTS E-class P450 group I signature 279 296 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00896 481 PRINTS E-class P450 group I signature 418 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00896 481 PRINTS E-class P450 group I signature 428 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00896 Vimu-Chr6 9848915 9850904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00896 26 383 Cytochrome P450 AT5G36110 53.463 4.53e-135 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00896 K20667 - qsa:O6P43_003868 715.687