Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00894 TGGAGAAAGCAAAGGAGAGAGAGAGAGAAAAGAGAAGCAAAAAGTAAGAAAAAGAAAGATCTTTTTAAGGCCACAAAGAAGCTTGTGGCTGAAATTGCAGAAATGTCGGAGCCAAAAGACCCCACGATCAAGCTCTTCGGGAAGACGATCCCCTTGTCGGAGATTCCGGCTGGATCCGCCGGAGCTCCCGCTTCGTCTTCCGGTGACCTTGTTGATGATAGTGTTGAACACAGCCAGGCTTCTTCCTCCAACTCCTCCAGGGAGTCTCATACGCGAGAGGAAGGTGTTGTGGACGAGGACTCACTGGGAGAAAAACCAGCTGATGATAAGAAGGAAGCCCCAACCCAATCATTAGAAGAGGTCAACAATCCAGATACCGTCTCTGGAACCTGTGAAGAATCCATTACTGAACCAACTGACAAGGAGACCACTACATTGAAAACCTCAAAAACTGAAGAAGAACTAAGCGAGACAAGTAAGTCACAGGATAACAACCTCAAAAAACCAGATAAAATACTTCCTTGTCCCCGCTGTAATAGTATGGATACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCCCGTCACTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGGGGGACTATGAGGAATGTTCCTGTAGGTGCTGGTCGCAGGAAGAACAAGAGCTCGTCTTCTCACTATCGCCAGATAACTGTTCCTGATGCTGCCCTCCAGAATCCTCAACTAGACTTGCCAAATGGAGCGTATCATCCTTCCTTGAAATGTAATGGGGCAGTCCTTACATTTGGATCTGATACACCCTTGTGTGAATCAATGGCATCCGTTTTGAACCTTGCTGATAAAACCGTGCACAACTATGCAAGAAATGGATTTTATAAACCTGAAGAACTAAAAGTTCCAGTTCCACATGCCAGTGGAGAAAAAAGAGATGATCAATCCAGTAAATCTTCAGTTACCTCCACAAAGTCATTGGAAGGTGCAAGCACCAATGGAGCCCAAGAACAAGCTATGCCAAACTGTCATCGTTTCCCACCACAGGTTCCTTACTATACCGGTAACTCTTGGCCTATTCCATGGAATCCAGTGCAGTGGAGTTCTCCAGTACCACCTACATTTTGTCCCCCAGGATTCGCCATGCCACTCTATCCTGCTGCAGTTTATTGGGGTTGTGCTGTGTCTGGTGCATGGAATATCCCATGGGTAGCACAACCGTCCTCACCGAAGGGTGCAACTTCAAACTCTGGCTCTAACTCACCAACCTTGGGTAAACATTCAAGGGAAGACAACATTCTGAAATCAAATGAATCTGGAGGTGGTGAGGATGGACACAACAAAGAAAACCACAAAGAGAAGTGCCTGTGGGTTCCAAAAACTCTAAGGATTGATGACTCTGGAGAAGCAGAAAAAAGCACTATATGGACAACACTGGGGATTAAAAATGACAAGGCTGACTCAGTTCCTAGGGAAAAACTCTTTAAAGGCTTCCCTTCAAAGCTTGATGAGAAAAACCATTCAATCCAAGCCTCACCAGTATTGCAGGCCAATCCTGCAGCGTTGTCAAGGTCACTTAAGTTTCATGAGACCTCATAG 1605 0.4561 WRKQRREREKREAKSKKKKDLFKATKKLVAEIAEMSEPKDPTIKLFGKTIPLSEIPAGSAGAPASSSGDLVDDSVEHSQASSSNSSRESHTREEGVVDEDSLGEKPADDKKEAPTQSLEEVNNPDTVSGTCEESITEPTDKETTTLKTSKTEEELSETSKSQDNNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRQITVPDAALQNPQLDLPNGAYHPSLKCNGAVLTFGSDTPLCESMASVLNLADKTVHNYARNGFYKPEELKVPVPHASGEKRDDQSSKSSVTSTKSLEGASTNGAQEQAMPNCHRFPPQVPYYTGNSWPIPWNPVQWSSPVPPTFCPPGFAMPLYPAAVYWGCAVSGAWNIPWVAQPSSPKGATSNSGSNSPTLGKHSREDNILKSNESGGGEDGHNKENHKEKCLWVPKTLRIDDSGEAEKSTIWTTLGIKNDKADSVPREKLFKGFPSKLDEKNHSIQASPVLQANPAALSRSLKFHETS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00894 534 MobiDBLite consensus disorder prediction 71 86 - -
Vimu6g00894 534 MobiDBLite consensus disorder prediction 321 341 - -
Vimu6g00894 534 ProSiteProfiles Zinc finger Dof-type profile. 173 227 IPR003851 GO:0003677|GO:0006355
Vimu6g00894 534 MobiDBLite consensus disorder prediction 1 22 - -
Vimu6g00894 534 MobiDBLite consensus disorder prediction 409 429 - -
Vimu6g00894 534 MobiDBLite consensus disorder prediction 87 116 - -
Vimu6g00894 534 MobiDBLite consensus disorder prediction 53 172 - -
Vimu6g00894 534 MobiDBLite consensus disorder prediction 307 345 - -
Vimu6g00894 534 Pfam Dof domain, zinc finger 170 227 IPR003851 GO:0003677|GO:0006355
Vimu6g00894 534 PANTHER CYCLIC DOF FACTOR 2 35 534 IPR045174 GO:0003700|GO:0006355
Vimu6g00894 534 MobiDBLite consensus disorder prediction 135 167 - -
Vimu6g00894 534 MobiDBLite consensus disorder prediction 117 134 - -
Vimu6g00894 534 MobiDBLite consensus disorder prediction 430 454 - -
Vimu6g00894 534 ProSitePatterns Zinc finger Dof-type signature. 175 211 IPR003851 GO:0003677|GO:0006355
Vimu6g00894 534 MobiDBLite consensus disorder prediction 409 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00894 Vimu-Chr6 9831848 9835176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00894 40 534 C2C2-Dof Transcription Factor Family AT5G39660 44.788 2.84e-107 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu6g00894 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00894 - - gmx:100788247 781.941