Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00880 ATGTGGCCCATGCTATTGACAGCAAAAGTTAGTTCCTCCAAGGAAGTGAAGAATTCCGAGATTTTTCCAACTTCTGCTCAACTTTTTTTCATATCAATATCTGTATCCAGTTTCTCTCAAATGTCAGAAAAACATTCCAACAATTCATCCGTGAATGTGCCTTTAGTAGCCGATCATGGCGAGTTGGCTCAGCATAAAACCATAACGTATCCTCCTTCTGCCCAAGACACTGTATCCTTGTTTCATACTTGTCTTAACGGACTCAATGCAATATCAGGTGTAGGTATACTCTCAGTTCCTTACGCTCTTGCATCTGGAGGATGGTTAAGCTTGGTTCTTTTGTTTGGTATTGCCACTGCAGCACTTTACACGGGCACGTTAATAAAAAGATGCATGGATATGAATACGAATATCAGAAGTTATCCTGATATAGGTGAACTTGCATTTGGAAAGACAGGGAGGATAATAGTGTCAGTATCCATGTATACTGAACTTTATCTAGTTTCAATGGGATTCTTGATTCTTGAAGGTGATAACTTGAGTAACTTGTTTCCCAATGCGAAGGTTCATATAGCTGGCTTAGCTATTGCAGGAAAACAATTCTTTGTGATATTGGTTTCTCTTATCATTTTGCCCACAGTTTGGTTGGATAGCTTGAGTCTACTCTCTTATGTATCTGCAAGTGGAGTCTTTGCTTCTCTTCTCATCATCCTTTCAATAACATGGACTGCAATATTTGATGGAGTTGGTTTTCATCATAAAGGAACTCTTATCCATTGGAATGGTCTTTCCACAGCTATTAGCTTGTATGCTTTCTGTTATTGCGCACATCCTGTCTTTCCAACATTGTATAATTCGATGACAAACAAACATCACTTCACTAATGTCTTAATTGGATGTTTTCTCTTAACTACTGTGGGCTATGCATCCATAGCTATAGTGGGTTATTTAATGTTCGGTGAGGAAGTTGAGTCACAAGTAACACTGAACCTGCCTCTGAACAAAGTTAGTTCAAAAGTAGCAATATACACAACATTGATGAATCCTATATCGAAGTTTGCTTTGATGACAACACCTATTACGAATGCTTTAAAAGACTTGCTTCCAAGGAGCTACAAGAATAAGGTGACGAACATCTTAGTTAGCACAATGTTGGTAATGAGCACCACCATTGCTGCCCTTGCTCTTCCTTTCTTTGGATCTCTTATGTCACTGGTTGGAGCCTTTTTGAGTGTCACAGCTTCTATTATGCTTCCATGCTTGTGTTACTTGAAGATTTCGGACACTTATAGAAACTTTGGGTGTGAGAGTATAGTCATAGTGATACTAATAATGGCAGCTTTAGCAATGGCAATATCTGGGACATACACCTCTTTCATGGAAATAGCACACCACCTGGTTCAACTATGA 1410 0.3894 MWPMLLTAKVSSSKEVKNSEIFPTSAQLFFISISVSSFSQMSEKHSNNSSVNVPLVADHGELAQHKTITYPPSAQDTVSLFHTCLNGLNAISGVGILSVPYALASGGWLSLVLLFGIATAALYTGTLIKRCMDMNTNIRSYPDIGELAFGKTGRIIVSVSMYTELYLVSMGFLILEGDNLSNLFPNAKVHIAGLAIAGKQFFVILVSLIILPTVWLDSLSLLSYVSASGVFASLLIILSITWTAIFDGVGFHHKGTLIHWNGLSTAISLYAFCYCAHPVFPTLYNSMTNKHHFTNVLIGCFLLTTVGYASIAIVGYLMFGEEVESQVTLNLPLNKVSSKVAIYTTLMNPISKFALMTTPITNALKDLLPRSYKNKVTNILVSTMLVMSTTIAALALPFFGSLMSLVGAFLSVTASIMLPCLCYLKISDTYRNFGCESIVIVILIMAALAMAISGTYTSFMEIAHHLVQL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00880 469 PANTHER OS05G0424000 PROTEIN-RELATED 85 447 - -
Vimu6g00880 469 Pfam Transmembrane amino acid transporter protein 78 459 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00880 Vimu-Chr6 9742802 9744424 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00880 79 462 Amino Acid or Auxin Permease AAAP Family AT3G28960 57.403 1.89e-160 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00880 K15015 - gmx:100794374 666.766