Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00878 ATGTCAAAAAAACTTTCGTACAATCCTTCCTTTAAGATTCCTTTCCTTCTCAATGATGAGGAGAAAGCCATTACCTCTTATCCTTCTGCCATAAAAACTGTATCCTTCTTTCGTACATGCCTTAATGGACTCAATACAATAGCAGGTGTTGGCATACTCTCAGTTCCTTATGCTCTTGCAACAGGAGGCTGGTTAAGCTTGGTTCTTCTGTTTTCCATTGCGGCCGCTGCATTTTACACGGGTCTTCTGATTAAAAGATGCATGGATAATGACTCAAACATTAGAACCTACCCTGATATAGGGGAACTTGCATTTGGAAAGACAGGAAGACTGATAGTGTCAATATCCATGTACACGGAACTATATCTGGTTTCAATAGGATTCTTGATTCTAGAAGGTGATAACTTGAGTAACATATTCCCCATCGGAGAGGTTCACATAGCAGGCTTAGCAATTGGTGGGAAACAATTATTTGTGATTATGGTTGCCCTTATCATCTTGCCCACAGTTTGGTTGGACAACTTGAGTCTACTCTCTTATGTATCTGCAAGTGGAGTCTTTGCTTCTGTTCTCATCATCCTTTCAATAACATGGACTGCAACATTTGATGGAGTTGGTTTTAATAATAAAGGGACTCTCGTCCATTGGAATGGTCTTCCCACAGCTGTTAGCTTGTATGCCTTCTGTTATTGCGCACATCCTGTCTTTCCCACTTTGTACAATTCGATGACAAACAAACATCAGTTCTCTAACGTCCTACTAGTATGTTTTCTCCTAACCACTGTGGGTTATGCATCCATGGCTATGGTGGGTTATTTAATGTTTGGTGACGGAGCTGAATCTCAAGTAACATTGAACCTGCCTCTGGACAAAGTCAGCTCAAAATTAGCAATATACACAACCTTGGTGAATCCCATATCCAAGTTTGCTTTGATGGCAACACCTATTACGAATGCTTTGAAAGACTTTCTTCCAAAGGTGTACAAGAATAGGGTGACGAGCCTCTTACTGAGTACACTGTTGGTATTGAGCACTACCGTTGTTGCCCTTGCCGTCCCTTTCTTTGGGTCTCTAATGTCATTGGTTGGAGCCTTTCTAAGTGTCACAGCTTCTATTCTGCTCCCGTGCTTGTGCTATTTGAAGATTTCGGGCACTTACAGAAAATTTGGGTGTGAGACGGTAGTCATAGTGATAATAATAATGACAGCTATTGTAATGGCAATTTCAGGAACCTACATCTCTCTCATGGAAATAATCCACAATTTATAA 1269 0.4082 MSKKLSYNPSFKIPFLLNDEEKAITSYPSAIKTVSFFRTCLNGLNTIAGVGILSVPYALATGGWLSLVLLFSIAAAAFYTGLLIKRCMDNDSNIRTYPDIGELAFGKTGRLIVSISMYTELYLVSIGFLILEGDNLSNIFPIGEVHIAGLAIGGKQLFVIMVALIILPTVWLDNLSLLSYVSASGVFASVLIILSITWTATFDGVGFNNKGTLVHWNGLPTAVSLYAFCYCAHPVFPTLYNSMTNKHQFSNVLLVCFLLTTVGYASMAMVGYLMFGDGAESQVTLNLPLDKVSSKLAIYTTLVNPISKFALMATPITNALKDFLPKVYKNRVTSLLLSTLLVLSTTVVALAVPFFGSLMSLVGAFLSVTASILLPCLCYLKISGTYRKFGCETVVIVIIIMTAIVMAISGTYISLMEIIHNL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00878 422 Pfam Transmembrane amino acid transporter protein 33 413 IPR013057 -
Vimu6g00878 422 PANTHER OS05G0424000 PROTEIN-RELATED 43 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00878 Vimu-Chr6 9726074 9727583 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00878 20 419 Amino Acid or Auxin Permease AAAP Family AT3G28960 58.354 2.79e-171 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00878 K15015 - gmx:100794374 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00878 6 9726074 9727583 Vimu6g00878 6 9726074 9727583 ECH