Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00876 ATGACAAAGAAACATCAGTTCTCTAATGTCCTACTAGTATGTTTTTTCCTAACCGCTGTGGCTTATGCATCTATGGCTAGAGTGGGTTATTTAATGTTTTGTGAGGAGGATGAATCACAAGTAACATTGATCCTTCCTCTGCATAAAGTCAGCTCAAAATTAGCAATATACACAACCTTGGTGAATCTCATATCCAAGTTTGCTTTGATGGCAACACCTATTACGAATGCTTTGAAAGACTTGCTTCCAATGACGTACAAGAATAGGGTGACAAGCATCTTACTGAGCACATCAGTTGTATTGAGCACTACCATTTTTGCCCTTATAGTCCCTTTCTTTGGGTCTCTAATGTCACTGATTGCAGCCTTTCTAAGTGTCACAACTTCTATTCTGCTTCCGTGCTTGTGCTACTTGAAGATTTCAGGCACTTATAGGAAATTTGGGTGTGAGACGGTAGCCATAGTGATAATAATAATGACAGCTATTGTAATGGCCATTTCAGAGACATACACCTCTCTCATGGAAATAACCGACAATTTATAA 543 0.3886 MTKKHQFSNVLLVCFFLTAVAYASMARVGYLMFCEEDESQVTLILPLHKVSSKLAIYTTLVNLISKFALMATPITNALKDLLPMTYKNRVTSILLSTSVVLSTTIFALIVPFFGSLMSLIAAFLSVTTSILLPCLCYLKISGTYRKFGCETVAIVIIIMTAIVMAISETYTSLMEITDNL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00876 180 Pfam Transmembrane amino acid transporter protein 5 167 IPR013057 -
Vimu6g00876 180 PANTHER OS05G0424000 PROTEIN-RELATED 2 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00876 Vimu-Chr6 9711055 9711802 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00876 1 176 Amino Acid or Auxin Permease AAAP Family AT3G28960 51.412 4.54e-59 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00876 K15015 - gmx:100794374 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00876 6 9711055 9711802 Vimu6g00876 6 9711055 9711802 ECH