Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00874 ATGGAAGGTACCAGCCAAAACACGTTTACCTTCATCACCACCTCCATCGACGCTCCAAGTCCAAGCACCCCTGAGATATCACCATCTCCTTCTGCTCTTTCAGGACTCGCACAAACTTACCCTCCTGGTTTTTCCAGAAAGGTGTTTGCGGAGGTTATCGGAACGTTTCTGTTGGTGTTCGTCGGAAGTGGTTCTGCCGGTCTCAGTGTTATTGATGAGAGCAGAGTGTCAAAGCTTGCAGCTTCAATTGCTGCAGGACTCATCGTGACAGTGATGATTTACTCAATTGGACACATTTCTGGAGCACACATGAACCCTGCGGTTTCCCTTGCTTTTGCTGCGGTGAGGCATTTTCCGTGGCCACAGTCATCATCAAAAGGGTTCAGCCAAGAGAAAAAAGAGGTAATGGTCAAGTTCACGCCTCACCGTGGACCCACGGTCCCGTTTTACGTAGTAGCTCAACTAACTGGATCCATTTCTGCTTCATACACATTGCGAGAGCTTTTCCAGCCATCAAAGGAAATTGGGGGAACAACACCTGCTGGATCACATATCCAAGCACTGATCGTGGAAATGGTGACTACTTTCACAATGGTGTTCATTTCCATGGCCGTGGCCACTGACACAAACGCTACAGGACAATTATCAGGAGTAGCAGTAGGTTCTTCTGTTTGCATATCAAGCATTGTTGCCGGACCAATATCGGGGGGATCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCTACATCAACCTACACGGGACTTTGGGTATATTTTGTTGGACCAATTACTGGGGCAGTTTTAGCAGCATGGTCTTACAACGTCATTAGGGACACGGAACACCCTGGTTTTCCATTTTCACTATCCTCCCTTTCATTCAAGGTACGCCAAAGCGTTAGTGGAACCAAAACCGACCAACGAAACTTGGTTTGA 939 0.476 MEGTSQNTFTFITTSIDAPSPSTPEISPSPSALSGLAQTYPPGFSRKVFAEVIGTFLLVFVGSGSAGLSVIDESRVSKLAASIAAGLIVTVMIYSIGHISGAHMNPAVSLAFAAVRHFPWPQSSSKGFSQEKKEVMVKFTPHRGPTVPFYVVAQLTGSISASYTLRELFQPSKEIGGTTPAGSHIQALIVEMVTTFTMVFISMAVATDTNATGQLSGVAVGSSVCISSIVAGPISGGSMNPARTLGPAIATSTYTGLWVYFVGPITGAVLAAWSYNVIRDTEHPGFPFSLSSLSFKVRQSVSGTKTDQRNLV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00874 312 PANTHER AQUAPORIN NIP2-1 36 283 IPR034294 -
Vimu6g00874 312 SUPERFAMILY Aquaporin-like 44 123 IPR023271 -
Vimu6g00874 312 SUPERFAMILY Aquaporin-like 145 284 IPR023271 -
Vimu6g00874 312 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Vimu6g00874 312 Gene3D Glycerol uptake facilitator protein. 27 284 IPR023271 -
Vimu6g00874 312 Pfam Major intrinsic protein 44 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g00874 312 Pfam Major intrinsic protein 146 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g00874 312 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g00874 312 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g00874 312 PRINTS Major intrinsic protein family signature 190 208 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g00874 312 PRINTS Major intrinsic protein family signature 221 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g00874 312 PRINTS Major intrinsic protein family signature 46 65 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00874 Vimu-Chr6 9679537 9682691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00874 45 307 Major Intrinsic Protein MIP AT5G37820 42.642 2.73e-64 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00874 K09874 - gmx:100788071 435.261