Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00866 ATGCACTTCCGTTGTTCCAAATGCGGCAACATTGGAACCGCATTTCCAACTGCGGTCCCGTATGAACCGCACTTCCAGTTGCGGATTAACACCCCCACCGCCACCAAAGCCTTGTCTTTCTCCAACGGGGTCCTCAAGCGACACCATCACCACCACCACCCCATGCCCGCCGCCGTCACCTACAAAGAATGCCTCAAAAACCACGCCGCCAACTTGGGTGGCCACGCTTTAGATGGATGCGGCGAGTTCATGCTGTCCCCCACAGCCACTGCCGCTGACCCCAGCTCCATTAAAGGCGCAGCATGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCGGATGAGCCGCCCATCGCATCCACCGCGCATGTGATAGAGTACCAGCCGCACCATCGCCACCACCCTCCTTGGAATTCCGCATCCCCGCCGCCGATCTCCTCCACCTCTTACTACCCCTCCGCCCAGAACATGCTCCTTGCCCTTTCTGCCGGGCTCGCCGTTCCGCCGGAGAGCACGACCGCACCCTCCACTGCTCTCACCAGAAAGCGCTTTAGAACCAAGTTCAGCCAGGATCAGAAAGAGAAGATGCACAAATGCAGAAGAGAGACGAAGATTTTGATTCACGAGTTTTGCAACGAGGTTGGCGTGGATAGAAGCGTTCTCACGGGTTTTGAAGACCCTAATAGCAACATCGGTGGTGGTGCTGAAGATCGCGGTGAGGATCCGAGTCACAATCACTTTGGTGGGGTGAACGTTGGTGCTAACGGGTCTTCCTCTACTTCTTGA 786 0.5751 MHFRCSKCGNIGTAFPTAVPYEPHFQLRINTPTATKALSFSNGVLKRHHHHHHPMPAAVTYKECLKNHAANLGGHALDGCGEFMLSPTATAADPSSIKGAACGCHRNFHRREPDEPPIASTAHVIEYQPHHRHHPPWNSASPPPISSTSYYPSAQNMLLALSAGLAVPPESTTAPSTALTRKRFRTKFSQDQKEKMHKCRRETKILIHEFCNEVGVDRSVLTGFEDPNSNIGGGAEDRGEDPSHNHFGGVNVGANGSSSTS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00866 261 MobiDBLite consensus disorder prediction 227 261 - -
Vimu6g00866 261 Gene3D - 169 225 - -
Vimu6g00866 261 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 222 - -
Vimu6g00866 261 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 112 IPR006456 -
Vimu6g00866 261 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 60 112 IPR006456 -
Vimu6g00866 261 Pfam ZF-HD protein dimerisation region 59 113 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00866 Vimu-Chr6 9573787 9575448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00866 36 221 ZF-HD Transcription Factor Family AT5G15210 47.549 4.54e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu6g00866 ZF-HD_dimer 7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00866 - - gmx:100789447 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00866 6 9573787 9575448 Vimu6g00866 6 9573787 9575448 ECH
Vimu8g00883 8 15880842 15882851 Vimu6g00866 6 9573787 9575448 PCT