Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00865 ATGGACATAACCCCAACAACAACCATAAACAACACCACTCCCAGTGCAACAACAAAATCCCCAGAACATGACACCGAAACACCCACCAGGATCAACACCCCCACCGCCACCAAACCCTTGTCTTTCTCCAACGGGGTCCTCAAGCGACACCATCACCACCACCACCACCCCATGCCCGCCGCCGTCACCTACAAAGAATGCCTCAAAAACCACGCCGCCAACTTGGGTGGCCACGCTTTAGATGGATGTGGTGAGTTCATGCCGTCCCCCACAGCCACTGCCGCCGACCCCAGCTCCATTAAATGCGCAGCATGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCGGATGAGCCGCCCATAGCGTCCACCACGCATGTGATCGAGTACCAGCCGCACCATCGCCACCACCCTCCACCTCCGTTCCAGGCAACGGGGGCGAATCGAAGTCCGAATTCCGCATCCCCACCGCCGATCTCCTCCTCTTACTACCCCTCCGCCCCGCACATGCTCCTTGCCCTCTCTGCCGGGCTCGCCGCTCCGCCGGAGAGCACGGCCGCACCCTCCACTGCTCTCACCAGAAAGCGCTTTAGAACCAAGTTCAGCCAAGAGCAGAAAGAGAAGATGCACAAGTTCGCTGAGAAAGTAGGGTGGAAGATGCAGAAGAGAGACGAAGATTTGATTCACGAGTTTTGCAACGAGGTTGGTGTGGATAGAAGCGTTCTCAAGGTTTGGATGCACAACAACAAAAACACCTTGGCCAAAAAAGATAATAATGTTAATATTACTAGCAATGATAATATTACTGATAATATTAATGATAATGATGCAAATGGGGGTGTCAAGGGTTTTGAAGATCCTAATAGCAACATCGGTGGTGGTGCTGAAGATCGCGGTGAGGATCCGAGTCACAATCACTTTGGTGGGGTGAACGTTGGTGCTAACGGGTCTTCTTCTACTTCTTGA 966 0.5383 MDITPTTTINNTTPSATTKSPEHDTETPTRINTPTATKPLSFSNGVLKRHHHHHHHPMPAAVTYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPDEPPIASTTHVIEYQPHHRHHPPPPFQATGANRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPSTALTRKRFRTKFSQEQKEKMHKFAEKVGWKMQKRDEDLIHEFCNEVGVDRSVLKVWMHNNKNTLAKKDNNVNITSNDNITDNINDNDANGGVKGFEDPNSNIGGGAEDRGEDPSHNHFGGVNVGANGSSSTS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00865 321 MobiDBLite consensus disorder prediction 146 160 - -
Vimu6g00865 321 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 253 - -
Vimu6g00865 321 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Vimu6g00865 321 Pfam ZF-HD protein dimerisation region 62 116 IPR006456 -
Vimu6g00865 321 Gene3D - 182 256 - -
Vimu6g00865 321 MobiDBLite consensus disorder prediction 280 321 - -
Vimu6g00865 321 SUPERFAMILY Homeodomain-like 186 255 IPR009057 -
Vimu6g00865 321 FunFam Zinc-finger homeodomain protein 2 182 255 - -
Vimu6g00865 321 MobiDBLite consensus disorder prediction 131 161 - -
Vimu6g00865 321 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 115 IPR006456 -
Vimu6g00865 321 NCBIfam homeobox domain, ZF-HD class 194 251 IPR006455 -
Vimu6g00865 321 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00865 Vimu-Chr6 9548789 9549754 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00865 1 250 ZF-HD Transcription Factor Family AT5G15210 53.571 2.02e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu6g00865 ZF-HD_dimer 2.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00865 - - gmx:100786999 438.343