Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00863 ATGGAGAAGGAGGCCGGCGAAGAGAGGAAGGGAGATGAGAGAACCAGGATGTTGAGGAGAGTGATTCTGAGAAGACAGCCCCCTCGACGATGCCCGACCAATAACACGGTGACGATCGTGAGGAATGTGCAACATGGGGAGTGTCAGAGGAATCACGCGATCAATGCCGGAGGATTTGCTGTGGATGGCTGCATGGAGTTCTTTCCGAGTGGAGCAGAAGGAACTGCTGGGGCTATGATTTGTGGTGCATGTGGTTGCCACAAGAATTTCCATCGGAGGGAGATACATATACATGTTACTTGTCACTGCAATTCTGGCAGTGGATAG 327 0.5168 MEKEAGEERKGDERTRMLRRVILRRQPPRRCPTNNTVTIVRNVQHGECQRNHAINAGGFAVDGCMEFFPSGAEGTAGAMICGACGCHKNFHRREIHIHVTCHCNSGSG 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00863 108 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 46 95 IPR006456 -
Vimu6g00863 108 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 26 96 - -
Vimu6g00863 108 Pfam ZF-HD protein dimerisation region 43 95 IPR006456 -
Vimu6g00863 108 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 45 94 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00863 Vimu-Chr6 9518121 9520811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00863 40 105 Zinc finger-homeobox gene family AT3G28917 62.687 6.89e-26 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu6g00863 ZF-HD_dimer 1.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00863 - - vra:106758454 193.741