Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00862 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGAGTCAAGAAAGGGCCTTGGACTCCTGAAGAAGACATCATTTTGGTGTCTTATATACAGGACCATGGTCCTGGCAATTGGAGGACAGTTCCTACCAAGACAGGGTTGTCAAGATGCAGTAAGAGTTGTAGACTTAGATGGACAAATTACCTGCGGCCAGGAATCAAACGTGGTAACTTCACAGAACAAGAGGAGAAGATGATTATCCACCTTCAAGATCTTTTAGGGAACAGTTCTTGGATCCACAATCTTAACTTAACTGGAACACATTGGCTATGTTACAGATGGGCTGCAATAGCTTCATACCTTCCACAGAGAACGGATAATGACATAAAGAACTATTGGAACACCCATTTAAGAAAGAAGTTGAAAAAGTTGCAAACAGGTTGTGAAGGTAGCTTGGGAGATTCGTTTTCAGGATCAAGGCAAATTCCTAGGGGCCAGTGGGAAAGAAGGCTCCAAACTGATATCCAAATGGCAAAGAGAGCTCTGAGTGAAGCTCTTTCCCCAGAGAAGCCAACTTGTTTATCTGGATCAAACTCAAACCCTTCAGACAGTAGCAGTTCTTTCTCTTCCACCAAACCACCTCAATCTTTGTGCTATGCTTCGAGTGCTGAGAACATAGCTCGTATGTTGAAGGGTTGGATGAAAAACCCTCCAAAGTCCTCAAGAACTAACTCATCTGTGACTCAGAACTCCTTCAACAACTTAGTCGCAGCTGGTGCTGATACTGCTTCTAGTGGAGCAAAGGGACCCAACAGCGTTGAATTGTCTGAGAATTTTGAATCCCTGTTTGAGTTTCATCAGTCTTTTGAGTCCTCAAACTCTGATGAATTGTCTCAGTCGTTTTCTCCCGAAGAAAATAAGCCTGATATTGGTGCAGAAATAATGCCCTTCTCTTTGCTTGAGAAATGGCTTCTTGATGAGGCTGCTTGCCAAGAGAAAGTTGGTTGTGATGTTTTTCAAGCCTTGGGTGCTAAAAGTGTATATTTGATTATTGACATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAATAATACTGTATTAG 1092 0.4075 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQDHGPGNWRTVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNSSWIHNLNLTGTHWLCYRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKLQTGCEGSLGDSFSGSRQIPRGQWERRLQTDIQMAKRALSEALSPEKPTCLSGSNSNPSDSSSSFSSTKPPQSLCYASSAENIARMLKGWMKNPPKSSRTNSSVTQNSFNNLVAAGADTASSGAKGPNSVELSENFESLFEFHQSFESSNSDELSQSFSPEENKPDIGAEIMPFSLLEKWLLDEAACQEKVGCDVFQALGAKSVYLIIDIIIIIIIIIIIIIIIIILY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00862 363 Gene3D - 13 66 - -
Vimu6g00862 363 ProSiteProfiles Myb-like domain profile. 62 129 IPR001005 -
Vimu6g00862 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vimu6g00862 363 MobiDBLite consensus disorder prediction 176 206 - -
Vimu6g00862 363 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu6g00862 363 Pfam Myb-like DNA-binding domain 67 129 IPR001005 -
Vimu6g00862 363 CDD SANT 16 61 IPR001005 -
Vimu6g00862 363 FunFam MYB-related transcription factor 13 66 - -
Vimu6g00862 363 Gene3D - 69 133 - -
Vimu6g00862 363 MobiDBLite consensus disorder prediction 182 206 - -
Vimu6g00862 363 SUPERFAMILY Homeodomain-like 11 125 IPR009057 -
Vimu6g00862 363 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu6g00862 363 SMART sant 13 63 IPR001005 -
Vimu6g00862 363 SMART sant 66 131 IPR001005 -
Vimu6g00862 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 269 - -
Vimu6g00862 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 133 IPR017930 -
Vimu6g00862 363 CDD SANT 69 129 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00862 Vimu-Chr6 9497081 9498545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00862 1 327 MYB Transcription Factor Family AT5G62470 48.518 1.84e-98 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g00862 Myb_DNA-binding 9.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00862 K09422 - gmx:778080 508.834