Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00857 ATGGTGCAGAGGCTCACTTATCGCAAGCGCCACAGCTATGCCACCAAATCGAATCAGCACCGGATTGTTAAGACCCCTGGTGGGAAGTTGGTGTACCAGAGCACTAAGAAGAGGGCTAGTGGACCCAAATGTCCTGTCACTGGGAAGAGGATCCAAGGGATCCCCCACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGTCTAGGAACCGCCGGACAGTTAACCGGGCCTATGGAGGTGTTTTATCTGGTGGAGCTGTTAGAGAAAGGATTATTCGGGCTTTCCTTGTTGAAGAACAGAAAATTGTGAAAAAGGTATTGAAGATCCAGAAGGCAAAAGAAAAGCAGGCTGCTAAGAGTTAA 363 0.4821 MVQRLTYRKRHSYATKSNQHRIVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00857 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vimu6g00857 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vimu6g00857 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vimu6g00857 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vimu6g00857 120 MobiDBLite consensus disorder prediction 31 50 - -
Vimu6g00857 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Vimu6g00857 120 Gene3D - 1 38 - -
Vimu6g00857 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 116 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vimu6g00857 120 Gene3D - 39 120 - -
Vimu6g00857 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00857 Vimu-Chr6 9450261 9451878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00857 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 92.437 1.14e-76 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00857 K02915 - rvl:131311705 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00857 6 9450261 9451878 Vimu6g00857 6 9450261 9451878 ECH