Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00856 ATGTCTAGCCGAAGATCCAGACAACATTCAGGGTCTACAAGGATCTCCGATGACCAAATCATCGAGCTTGTTTCCAAATTGCGCCAACTTGTTCCTGAGATTCGCAGTAGGCGATCTGACAAGGTTTCAGCGTCGAAGGTCCTACAAGAAACCTGCAACTACATCAGAAGCTTGCACAGAGAGGTGAGTGACTTGAGTGAGCGACTGTCTCAATTGTTGACCACAATTGATGCTGATAGTGTGCTGAGAGAGAGCCTGGGAGCTATAGTGCAGTTTGAGGCTGTACCTCCCATATGGCAGAAAAATGACTACAATATTTCCACCATTCCTCAACTGAATGTTGCTTACACCACATTGAAGTCTTCTTTGTCATTGAGTTTGCGCTTCTTAATGAGATTCTTTCACTCTTCGGTTCTAAATAGAAATTGGGAATTTAAATATCAAATCTTCTAA 453 0.4283 MSSRRSRQHSGSTRISDDQIIELVSKLRQLVPEIRSRRSDKVSASKVLQETCNYIRSLHREVSDLSERLSQLLTTIDADSVLRESLGAIVQFEAVPPIWQKNDYNISTIPQLNVAYTTLKSSLSLSLRFLMRFFHSSVLNRNWEFKYQIF 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00856 150 PANTHER TRANSCRIPTION FACTOR PRE 1 80 IPR044293 GO:0006355|GO:0040008|GO:0046983
Vimu6g00856 150 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 78 IPR036638 GO:0046983
Vimu6g00856 150 Coils Coil 55 75 - -
Vimu6g00856 150 CDD bHLH_AtPRE_like 10 75 - -
Vimu6g00856 150 Pfam Helix-loop-helix DNA-binding domain 22 58 IPR011598 GO:0046983
Vimu6g00856 150 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Vimu6g00856 150 Gene3D - 2 86 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00856 Vimu-Chr6 9427027 9430174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00856 12 80 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 72.857 3.71e-29 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g00856 HLH 0.00012 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00856 - - gmx:100796852 151.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00856 6 9427027 9430174 Vimu6g00856 6 9427027 9430174 ECH