Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00849 ATGGCCTTTCCACCTTCTCACACCTTCACGTTTCACACGCACGAAGAAGATCACCACCATCTCCCTTCAACCTCTTTCAACGCCTTTCCCTCTTTGCCACCCCAACACTTTCAAGGGGGTACACCACCGTTGATGTTGAAGCGGTCCATGTCGTTTTCAGGCATTGAGAACAAGTGCGATGAGGTGAACGGAGATGATGAGTTATCCGACGATGGGAACTTTCAGTGTGGGGAGAAGAAAAAGAGGCTGAATTTGGAACAGGTGAAGGCTCTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCAGAAAGGAAAGTGCAGTTAGCTAAGGCTTTGGGGTTGCAACCGAGACAAATTGCCATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAATTGGAGAAGGAATACGACACACTCAAGAAGCAGTTTGAGGCAGCTAAGGCTGATAATGATGTTCTTAAGAGTCAGAATCAGAAATTACAGGCAGAGGTAATATTGGTTCTAGCTTTCTTCAAATTTGTGTTTGGATCAATCATTCAACTTTCCAAATAG 564 0.4504 MAFPPSHTFTFHTHEEDHHHLPSTSFNAFPSLPPQHFQGGTPPLMLKRSMSFSGIENKCDEVNGDDELSDDGNFQCGEKKKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYDTLKKQFEAAKADNDVLKSQNQKLQAEVILVLAFFKFVFGSIIQLSK 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00849 187 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Vimu6g00849 187 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Vimu6g00849 187 SMART HOX_1 77 138 IPR001356 GO:0003677
Vimu6g00849 187 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Vimu6g00849 187 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Vimu6g00849 187 MobiDBLite consensus disorder prediction 1 27 - -
Vimu6g00849 187 CDD homeodomain 79 135 IPR001356 GO:0003677
Vimu6g00849 187 Coils Coil 126 167 - -
Vimu6g00849 187 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 48 169 IPR045224 GO:0003700
Vimu6g00849 187 SUPERFAMILY Homeodomain-like 73 136 IPR009057 -
Vimu6g00849 187 FunFam Homeobox-leucine zipper protein ATHB-13 70 138 - -
Vimu6g00849 187 Pfam Homeobox associated leucine zipper 134 169 IPR003106 GO:0006355|GO:0043565
Vimu6g00849 187 Gene3D - 74 143 - -
Vimu6g00849 187 Pfam Homeodomain 79 132 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00849 Vimu-Chr6 9359347 9361834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00849 1 171 Homeobox Transcription Factor Family AT5G15150 59.788 3.23e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu6g00849 Homeodomain 7.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00849 K09338 - gmx:100797920 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00849 6 9359347 9361834 Vimu6g00849 6 9359347 9361834 ECH
Vimu8g00901 8 16181490 16184276 Vimu6g00849 6 9359347 9361834 PCT