Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00840 ATGTCTAGCCCTAGTAATCCTCCAGAGATAGAAGAGAAGAGAGTTACACAGGAAGATAAAGTAAAATCTGCTAAAACTGAGATGGGTGAGGTGAAGGAAGAAAATGAGAGATTGAAGAAGACGCTGGAAAGAGTAGAAAAGGATTACCAATCCCTTCAACTCCGTTTCTTTGACATCCTTCACAAAGATGTTCTAAAGAAGGGTGTGATTACTTCCCATGATGATCAAAGTGAAGAGCCTGAGTTTGTCTCACTTTGCCTTGGAAGGAGTCCAACGGAGCCTAAGAAGGAGGCAAGAATTGGAGACTTTGAAAAACTGACAGAAGAAAATGTTGGACCCAACCTTACTCTTGGATTAGACTCCAAACACTTGTTGGAGATGGAGATTGTGTCTGATTTGAGTCCGAGGAATAGCTCAGAAGAACCAAAGGAAACGGAAACAGAAGGAACACTGTCAACAAATCAATCAGCAAAAGTGATAAATGTAAATACCGACATTTCAGATCAAATGCCAGCCAAGAGAGCAAGAGTATCTGTGAGAGCTAGATGTGATACTCCAACGATGAATGATGGGTGTCAGTGGAGGAAATATGGACAGAAGATAGCAAAGGGAAATCCATGCCCGAGGGCATACTATCGTTGCACAGTTGCACCAACATGCCCAGTTAGGAAACAGGTACAAAGGTGTTCCCAGGACCTGTCCATCTTAATCACAACCTATGAAGGAACCCATAACCACCCACTTCCAGTCTCAGCCACAGCCATGGCTTCAACCACTTCTGCTGCTGCATCCATGCTACTGTCAGGTTCTTCAACATCTTCAAGCCACATCTCAGCATCTTTTGGAAATGGTCTAAGTTTCAGTGATCAGTATAACGAATCAAGAGCCAAACAAATCTTCTCACCACCAAACCATGCCTCACCACATATGTTCTCAACAATCACTCTAGACCTTACCTCTTCAGCTCCTTCCTCCTTATCAACACAATTCCACCGTGGTTTAACTTCAACCGTGGCTCCAGTTTCAAACCCAAGATCCTCAGCTAGTCTCAGCTTTTGTTCACCGGACCATAACTTCATACCATCCATTTGGGGTAAGGGGTTCCATGATAATGCCACAACCACAACAGCAATTGACAAAATCCCCACAAGGCCAATTACGCAGCCAAATAATTTCCAACAGCATTTCTACCAACAATGCACAACAAACCAAACTCCTTCCAGAGAAGCTTTGGCAGAAACAATAACCAAAGCAATCAGCACAGACCCGAGTTTTCGTTCAGTAATAGCTGCTGCAGTTTCATCAATTGTTGAACGTGGATCAAACGGTGATAAACAAGAGGTAACAGAGAATGTTCTTGGTTCAGGGTTGAACTTAAAACTTGGGGAACATCTTCAATTGGCTTCACCTAGTCCCTTGAACCAGAACGGGAAAGGATGCTTAACAGGCTACTTAAAAAGTTTGGCCTCTAAAAGTTCCGAGGCTGGAAACTTCATTCTTCTTCAACCACCATTGCCATTTTCTTTCTCCAAAAATGTCACAAATCAGATGAACCGCTATGTTCCAGAAATGGACACGCATCACTAG 1587 0.4316 MSSPSNPPEIEEKRVTQEDKVKSAKTEMGEVKEENERLKKTLERVEKDYQSLQLRFFDILHKDVLKKGVITSHDDQSEEPEFVSLCLGRSPTEPKKEARIGDFEKLTEENVGPNLTLGLDSKHLLEMEIVSDLSPRNSSEEPKETETEGTLSTNQSAKVINVNTDISDQMPAKRARVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPTCPVRKQVQRCSQDLSILITTYEGTHNHPLPVSATAMASTTSAAASMLLSGSSTSSSHISASFGNGLSFSDQYNESRAKQIFSPPNHASPHMFSTITLDLTSSAPSSLSTQFHRGLTSTVAPVSNPRSSASLSFCSPDHNFIPSIWGKGFHDNATTTTAIDKIPTRPITQPNNFQQHFYQQCTTNQTPSREALAETITKAISTDPSFRSVIAAAVSSIVERGSNGDKQEVTENVLGSGLNLKLGEHLQLASPSPLNQNGKGCLTGYLKSLASKSSEAGNFILLQPPLPFSFSKNVTNQMNRYVPEMDTHH 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00840 528 SMART WRKY_cls 188 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00840 528 Pfam WRKY DNA -binding domain 189 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00840 528 ProSiteProfiles WRKY domain profile. 183 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00840 528 Gene3D WRKY domain 173 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00840 528 MobiDBLite consensus disorder prediction 1 34 - -
Vimu6g00840 528 SUPERFAMILY WRKY DNA-binding domain 181 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00840 528 Coils Coil 14 55 - -
Vimu6g00840 528 MobiDBLite consensus disorder prediction 131 152 - -
Vimu6g00840 528 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 13 444 IPR044810 GO:0003700
Vimu6g00840 528 MobiDBLite consensus disorder prediction 11 34 - -
Vimu6g00840 528 FunFam probable WRKY transcription factor 31 173 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00840 Vimu-Chr6 9298238 9300738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00840 28 512 WRKY Transcription Factor Family AT5G15130 41.746 4.49e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu6g00840 WRKY 6.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00840 - - gmx:100780402 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00840 6 9298238 9300738 Vimu6g00840 6 9298238 9300738 ECH
Vimu6g00840 6 9298238 9300738 Vimu7g00769 7 7679390 7683420 ECH
Vimu7g03914 7 36665593 36668675 Vimu6g00840 6 9298238 9300738 ECH