Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00830 ATGGCAGGAAGTTCATGCAAGGTTGCCTTTATCTTGGTCGCTTTTGCCATTACTATTCCATGCCTTGAGGCTGGCATTGCTGCGTTCGACGAATTTCTCCAAGAAAAAGCTATAGAGGCCCATGAAATCGCTATTAAATCCTACGTGCCTGACCCTACAAACGCTACTACCCACCAAGATATTCATGATGACGAGGATTTTAAGAAGACGTCAAAGAAGTCAAACAACACAAGGAGGGAGCTGAAGCAGAGCGAGAAGAAGAAATACAATGGACCTTGCTTGGCCCTGAACCCAATCGATCGTTGTTGGAGGTGCAAGAGCAACTGGGCCAAAAACCGTTTTAAGTTAGCCAGTTGCGTGAAGGGTTTTGGAAGAAGGGCCATCGGAGGAGCCAACGGCAAAATCTACACTGTCACTGATCCCTCTGACGATGATCCCGTTAACCCAAAACCAGGAACCCTACGCTACGCGGTTCTACAAAAGGACCCACTGTGGATCATATTTTCACGAAGCATGGTCATCAAGCTGAATTACGAGTTGTTGATTTCTTCTGACAAAACCATCGACGGTCGCGGGTACAGCGTGGTGATCAAGGATGGCGCAGGCCTTACCATGCAGTTTGTGAACAACATTATTATCCATGGGCTTAAAATACATCAGATCAAGTCCACATCAGGTGGCATGATCAGGGACTCTTGGGACCATGTCGGAATAAGAACAAGGGCTGATGGGGATGCCATCTCCATTTTCGGCTCTTCAAACATTTGGATCGATCACATCTCACTCGCTGATTGCGAGGATGGTCTCATCGACGTTATCCAGGGATCCACTGCAATCACCATCTCAAATTGCCACATGACCAAACATAACGATGTGATGTTGTTCGGAGCGAGCGACACTTTCTCCGGAGACAAGATAATGCAGGTGACTGTGGCATTCAACCATTTCGGGCAGGGTCTGATTCAGAGAATGCCCAGATGCAGATGGGGTTTCTTCCATGTGTTGAACAACGACTACACTCACTGGCTGATGTATGCAATTGGTGGGAGCTCAGGGCCAACGATTCTGAGCCAAGGAAACCGGTTCATTGCACCAAACAACGACGCTGCGAAGATAGTGACGCACAGGGACTATGCACCCTCTTCTGAGTGGGAGAAATGGCAATGGAGATCAGAAAACGATGTCTTCATGAATGGGGCTAAGTTTATTCAGTCAGGGAAACCTCTTGGAAAGCTTCCATTTAACAAAGGGTTTCTCATGAAACCTAGACATGGGTCACAAGCCAACAGGCTCACACGCTTTGCTGGAATCCTCAACTGCAAGGTGGGAAGCCCTTGCTAG 1341 0.4787 MAGSSCKVAFILVAFAITIPCLEAGIAAFDEFLQEKAIEAHEIAIKSYVPDPTNATTHQDIHDDEDFKKTSKKSNNTRRELKQSEKKKYNGPCLALNPIDRCWRCKSNWAKNRFKLASCVKGFGRRAIGGANGKIYTVTDPSDDDPVNPKPGTLRYAVLQKDPLWIIFSRSMVIKLNYELLISSDKTIDGRGYSVVIKDGAGLTMQFVNNIIIHGLKIHQIKSTSGGMIRDSWDHVGIRTRADGDAISIFGSSNIWIDHISLADCEDGLIDVIQGSTAITISNCHMTKHNDVMLFGASDTFSGDKIMQVTVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNDAAKIVTHRDYAPSSEWEKWQWRSENDVFMNGAKFIQSGKPLGKLPFNKGFLMKPRHGSQANRLTRFAGILNCKVGSPC 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00830 446 Coils Coil 67 87 - -
Vimu6g00830 446 Gene3D - 96 439 IPR012334 -
Vimu6g00830 446 PANTHER PECTATE LYASE 18-RELATED 44 444 IPR045032 GO:0030570
Vimu6g00830 446 SMART amb_all 171 368 IPR002022 -
Vimu6g00830 446 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Vimu6g00830 446 PRINTS Pollen allergen Amb family signature 345 364 IPR018082 -
Vimu6g00830 446 PRINTS Pollen allergen Amb family signature 179 195 IPR018082 -
Vimu6g00830 446 PRINTS Pollen allergen Amb family signature 387 411 IPR018082 -
Vimu6g00830 446 PRINTS Pollen allergen Amb family signature 417 440 IPR018082 -
Vimu6g00830 446 PRINTS Pollen allergen Amb family signature 119 136 IPR018082 -
Vimu6g00830 446 PRINTS Pollen allergen Amb family signature 143 168 IPR018082 -
Vimu6g00830 446 PRINTS Pollen allergen Amb family signature 243 264 IPR018082 -
Vimu6g00830 446 SUPERFAMILY Pectin lyase-like 97 437 IPR011050 -
Vimu6g00830 446 Pfam Pectate lyase, N terminus 26 81 IPR007524 GO:0030570
Vimu6g00830 446 Pfam Pectate lyase 182 362 IPR002022 -
Vimu6g00830 446 MobiDBLite consensus disorder prediction 54 84 - -
Vimu6g00830 446 MobiDBLite consensus disorder prediction 57 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00830 Vimu-Chr6 9228706 9230208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00830 15 446 Polysaccharide Lyase AT5G15110 55.240 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00830 K01728 - gmx:100780236 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00830 6 9228706 9230208 Vimu6g00830 6 9228706 9230208 ECH