Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00827 ATGCAGTTTCCCATTGCCTCTCTCCTCCACCACCTACACCCCTTCTGGACTGATTTTCAGAACTGTGATGTTCTTCTTTTAGTTCTGTTGATTGTGACTGTGATCACGGTCGTGATCATCGTATGGGTTGCAGAGTCTTCAATTATTGGAACTCTTTCTAAGACTCTGTGGAAGATGGGGTTTGGGAATAATGCAATTCAAGCAGGGAGTTTGGATGTGGGGAAGTCAAAGGTTAAGATGCAAAAGGCTGGTGCTGAAAAGGAAATTGGGTGCTGTGTTAAATTCTGTTTCATTGGGAGCTGTATACCTTCAAGATCAAAGGTTGATACTTCCATCAGTGGCACTAGTGCTAACAGTGTGGAAAAAGCATCTGCATATGAGAAAAACAAGAAGGAAACAAATGCTCTTCCAGGGTCCTCTACAACAACCAGTAATGCAGAAAGTATCCCTTCCACCCCAAAATTCAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTTACATTCAACGAGCTTAAGTTGGCCACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGATGTGTTTTCAAGGGTTGGATCGAAGAAAATGGTACTGCACCTGTGAAACCTGGTACCGGGCTTACTGTAGCTGTGAAAACTCTCAACCATGATGGGCTTCAGGGTCACAAAGAGTGGCTTGCAGAGTTAGACATTCTTGGTGACCTCGTCCATCCAAATCTGGTCAAATTGGTTGGTTTCTGTATTGAAGATGACCAAAGATTGTTGGTTTATGAATGCATGCCCCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCGTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTTCTTTTCTCCATGAAGAAGCCCAGCGACCTGTAATCTATCGTGATTTTAAGACATCTAATATTCTGTTGGATGCGGAATACAATGCAAAGCTCTCTGATTTTGGACTTGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCAACAAGAGTCATGGGAACATATGGTTATGCAGCTCCTGAGTATGTGATGACTGGACACTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTACTGCTAGAAATGCTGACCGGGCGGCGATCCATCGATAAGAACAGACCAAATGGGGAACACAATCTTGTGGAGTGGGCAAGGCCTGTGCTTGGCGACAGGAGGATGTTACTACGGATCATTGATCCTCGCCTTGAAGGTCACTTCTCTGTTAAAGGGGCTCAGAAGGCTGCACAGCTGGCTGCTCAATGCCTTTGCCGTGATCCAAAATCCAGACCTATGATGAGTGATGTTGTTCATGCTTTGAAGCATTTGCAAAACCTCAAGGATATGGCCATCTCAACTTTTCATTTTCAGGTTGCACGAGTGGATCGAACCATGTCCATGCCAACTTCTAAAAATGGTATGCAAGCACAGTTAACAATATCAAGGAAGGGTCAACCTGCAAGGTCCTTGTCAAGTCCAAAAGGCCCTCATGGTTCTCCTTATCATCATTATGTCAAGTCACCAAAACCAAATGGATGA 1602 0.4413 MQFPIASLLHHLHPFWTDFQNCDVLLLVLLIVTVITVVIIVWVAESSIIGTLSKTLWKMGFGNNAIQAGSLDVGKSKVKMQKAGAEKEIGCCVKFCFIGSCIPSRSKVDTSISGTSANSVEKASAYEKNKKETNALPGSSTTTSNAESIPSTPKFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDLVHPNLVKLVGFCIEDDQRLLVYECMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLSFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRMLLRIIDPRLEGHFSVKGAQKAAQLAAQCLCRDPKSRPMMSDVVHALKHLQNLKDMAISTFHFQVARVDRTMSMPTSKNGMQAQLTISRKGQPARSLSSPKGPHGSPYHHYVKSPKPNG 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00827 533 Gene3D Phosphorylase Kinase; domain 1 160 265 - -
Vimu6g00827 533 MobiDBLite consensus disorder prediction 489 533 - -
Vimu6g00827 533 SUPERFAMILY Protein kinase-like (PK-like) 154 461 IPR011009 -
Vimu6g00827 533 MobiDBLite consensus disorder prediction 124 153 - -
Vimu6g00827 533 ProSitePatterns Protein kinases ATP-binding region signature. 186 218 IPR017441 GO:0005524
Vimu6g00827 533 FunFam Serine/threonine-protein kinase BIK1 147 265 - -
Vimu6g00827 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Vimu6g00827 533 Pfam Protein kinase domain 183 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00827 533 ProSiteProfiles Protein kinase domain profile. 180 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00827 533 MobiDBLite consensus disorder prediction 133 153 - -
Vimu6g00827 533 MobiDBLite consensus disorder prediction 489 509 - -
Vimu6g00827 533 PANTHER OS01G0588500 PROTEIN-RELATED 136 465 - -
Vimu6g00827 533 CDD STKc_IRAK 186 464 - -
Vimu6g00827 533 FunFam Probable serine/threonine-protein kinase PBL8 266 480 - -
Vimu6g00827 533 Gene3D Transferase(Phosphotransferase) domain 1 266 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00827 Vimu-Chr6 9195818 9200424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00827 138 477 Glycoside Hydrolase AT3G07070 51.989 1.20e-116 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu6g00827 Pkinase 5.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00827 - - vum:124829441 983.786