Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00824 ATGATTGACCGAGACCACCACCGGAAAGATGACGTCGCCGCCGGGAAACAGTCTCCGTTCTTCCCGTTCTACAGCCCGAGCCCCGCGCGCTTCCTGAAGAAGTCTCCAGCGCCGGCGGGAGGGAGCAGGAGCACGGCTTCCACGCCGAGGAGGTTCTTCCGGAGGCCGTTCCCTCCGCCACCGCCGGCTAAGCACATAAGGGCTGTGCTGGCGCAGCGACAGGGAAAGAAGGCGGCGGCAGCTGCGATATCGGAGGAGGGGGAGGATGGCGGTGGAGCTGCGGCGGATTTGGATAAGAGGTTTGGATTCTTCAAGGAGTTCACGGAAGTTGGTGAAGAAGTGGGTCGAGGGCATTTTGGGTATACTTGTTCTGCTAGGTTCAAGAAGGGTGAGCTTAAGGGTCAACAAGTGGCTGTTAAGGTCATACCAAAATCAAAGATGACAACAGCAATTGCTATTGAAGATGTGAGAAGGGAGGTGAAAATATTGCGAGCTTTGAATGGACACAGCAATTTCATACAGTTCTATGATGCGTTTGAAGACCAAAATAATGTGTACATTGTAATGGAGTAA 573 0.534 MIDRDHHRKDDVAAGKQSPFFPFYSPSPARFLKKSPAPAGGSRSTASTPRRFFRRPFPPPPPAKHIRAVLAQRQGKKAAAAAISEEGEDGGGAAADLDKRFGFFKEFTEVGEEVGRGHFGYTCSARFKKGELKGQQVAVKVIPKSKMTTAIAIEDVRREVKILRALNGHSNFIQFYDAFEDQNNVYIVME 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00824 190 Pfam Protein kinase domain 109 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00824 190 MobiDBLite consensus disorder prediction 1 59 - -
Vimu6g00824 190 Gene3D Phosphorylase Kinase; domain 1 99 190 - -
Vimu6g00824 190 SUPERFAMILY Protein kinase-like (PK-like) 109 190 IPR011009 -
Vimu6g00824 190 PANTHER SERINE/THREONINE-PROTEIN KINASE 103 190 - -
Vimu6g00824 190 ProSitePatterns Protein kinases ATP-binding region signature. 114 140 IPR017441 GO:0005524
Vimu6g00824 190 FunFam CDPK-related kinase 1 101 190 - -
Vimu6g00824 190 ProSiteProfiles Protein kinase domain profile. 108 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00824 Vimu-Chr6 9173532 9174441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00824 15 190 EF-hand Containing Proteins AT3G50530 67.403 8.09e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu6g00824 Pkinase 3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00824 K13412 - gmx:100807672 265.774