Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00821 ATGGCTTGGAAGGTGGCGCTAACTGTGCTGTTCTCCCTCGCACTCTTGTTCTCTCCGTCGCAATCTGCGGTTTTCAGCGTAGATCTAGGTTCCGAATCGTTGAAGGTGGCGGTGGTGAACCTGAAGCCCGGTCAATCTCCGATCTCGATCGCGATCAACGAGATGTCCAAGCGAAAATCGCCGGCGTTGGTCTCCTTCCACGACGGCCACCGCCTTCTCGGCGAAGAGGCGGCAGGCCTCGCTGCGCGTTACCCGCACAAGGTCTATTCCCAAACGCGGGACCTCCTCGGGAAGCCCCACGCTTCCGCGCAGAGGATTCTTAACTCAATGTACCTCCCTTTCAAGACGAAGGAAAATTTCCGAGGTGACATGAGTTTTGTCGTGGACGACGGAAACGAAAACGATAGCGTTTACTCCCCCGAGGAACTCGTCGCCATGGTGTTAGGTTACGCGGCGAATTTGGCGGAGTTTCACTCGAAGATTCCAATTAAGGACGCAGTGATCGCGGTGCCGCCATACATGGGACAGGCTGAGCGGAAAGGGCTGCTCGTGGCGGCACAGTTGGCGGGGATTAACGTTTTGTCCCTGATAAACGAGCATTCCGGTGCGGCGCTGCAGTATGGGATCGATAAGGACTTCTCGAACGAGACGAGGCACGTGATTTTCTATGACATGGGTGCGACCAGTACCTACGCGGCGCTTGTGTACTTCTCGTCGTACAAGGGTAAGGAGTATGGCAAGAGTGTGTCAGTGAACCAGTTTCAGGTCAAGGATGTGCGCTGGAACGCGGAGCTTGGTGGTCTGCACATGGAGTTGCGATTGGTGGAGTATTTTGCGGATCAGTTCAACGCGCAAGTTGGTGGTGGGATCGATGTGAGGAAGTTTCCCAAGGCCATGGCTAAATTGAAGAAACAGGTTAAACGGACTAAAGAAATTCTTAGTGCGAATACCGCCGCTCCTATTTCCGTCGAATCGCTTCATGATGACGTCGACTTCAGGAGCACTATAACCCGTGAGAAATTTGAAGAGCTTTGTGAAGACATTTGGGAAAAATCACTTTTACCAGTGAAAGAGGTGCTTGAGCATTCTGGCCTTTCATTGGAACAGATATATGCAGTAGAGTTAATAGGAGGAGCCACAAGAGTCCCAAAATTACAGGCTAAGCTTCAAGAATTCCTTGGTAGAAAAGAGCTTGATAGGCATCTTGATGCTGATGAAGCAATAGTTCTTGGTGCAGCTCTTCATGCAGCAAATTTAAGTGATGGAATTAAGTTAAACCGTAAACTAGGAATGGTTGATGGTTCCTTGTATGGATTTGTGGTTGAGTTGAGTGGTCCTGAACTTCTACAAGATGAAAGCTCTAGGCAGTTACTTGTACCACGAATGAAGAAAGTCCCGAGTAAGATGTTTAGGTCCATTAATCATAACAAAGATTTTGAAGTTTCACTAGCTTATGAAAGTGAGCATCTTTTGCCTCCTGGTGCTACCACTCCTGAAATTGCTCGATACCAAATATCTGGTTTGACAGATGCAAGTGAGAAATACTCATCTCGGAATTTGTCATCCCCCATCAAGGCAAGCATACATTTTTCTCTTAGTAGAAGTGGAATTCTTTCTCTGGATAAGGCAGATGCTGTTATTGAAATAACAGAGTGGGTGGAAGTTCCTAAGAAGAATTTAACTGTAGAGAATTCAACCATTTCATCAAATGTTTCGGCCGAATCTGCTGCTGGAAATAGTTCTGAGGGAAACAATGAAAGCATTCAAACTGACATTGGGAATAGTAACACATCCAACACTAGTGCAGAGGAGCAAGCTTCCGCCGAGCCCGCTACAGAGAAGAAACTGAAAAAGCGGACCTTTAGGGTGCCATTAAAGATTACTGAGAAGATAACTGGACTTGGAATGTCTCTGTCACAAGATTTTCTCACTGAAGCTAAAAAGAAATTACAAGTACTAGACCAAAAAGACACAGACAGAAAAAGAACAGCCGAGTTAAAAAATAATTTAGAAGGATATATATACTCTACTAAGGAAAAGATTGAAACTCTAGAGAATTTTGAAAAAGTTTCTACAAGTGAGGAACGCCAGTCCTTCATTGAGAAGCTTGATCAGGTGCAAGATTGGTTGTATACAGATGGTGAGGATGCCAATGCTGCAGAGTTTCAAGAGCGTCTAGATCAGTTAAAAGCTGTTGGAGATCCAATTTTCTTAAGGTTAAAAGAGCTTACAGCTCGACCAGCAGCAGTTGAGCATGCTCGTAAGTATATTGATGAGTTGAAACAGATTGTTGAAGAGTGGAAAGCAAAAAAGCCTTGGCTTCCGCAAGAACGAGTAGATGAGGTTATAGAAAGTTCTGAAAAATTAAAGAATTGGTTGGGCGAAAAAGAAGATGAGCAAAAGAAGACTTCTGGATTCAGTAAGCCAGCATTTACATCCGAAGAAGTATATTTAAAGGTGCTCGATCTGCAAAACAAGGTTGCCAGTATTAACAGAATTTCCAAGCCTAAGGTTCAGAAGCCTGAAAAGAATGAAACAGAGAGCAATGAACAAAATCCGGATGATTCCAATTCTACCTCAACGGAGAATTCCTCTTCAAGTGATTCATCTGCTGATAGTTCAGAAGGGGCAAACCAAGAAACTGTTACTGAGCAACCTGAAGGTCATGATGAGCTATGA 2679 0.4505 MAWKVALTVLFSLALLFSPSQSAVFSVDLGSESLKVAVVNLKPGQSPISIAINEMSKRKSPALVSFHDGHRLLGEEAAGLAARYPHKVYSQTRDLLGKPHASAQRILNSMYLPFKTKENFRGDMSFVVDDGNENDSVYSPEELVAMVLGYAANLAEFHSKIPIKDAVIAVPPYMGQAERKGLLVAAQLAGINVLSLINEHSGAALQYGIDKDFSNETRHVIFYDMGATSTYAALVYFSSYKGKEYGKSVSVNQFQVKDVRWNAELGGLHMELRLVEYFADQFNAQVGGGIDVRKFPKAMAKLKKQVKRTKEILSANTAAPISVESLHDDVDFRSTITREKFEELCEDIWEKSLLPVKEVLEHSGLSLEQIYAVELIGGATRVPKLQAKLQEFLGRKELDRHLDADEAIVLGAALHAANLSDGIKLNRKLGMVDGSLYGFVVELSGPELLQDESSRQLLVPRMKKVPSKMFRSINHNKDFEVSLAYESEHLLPPGATTPEIARYQISGLTDASEKYSSRNLSSPIKASIHFSLSRSGILSLDKADAVIEITEWVEVPKKNLTVENSTISSNVSAESAAGNSSEGNNESIQTDIGNSNTSNTSAEEQASAEPATEKKLKKRTFRVPLKITEKITGLGMSLSQDFLTEAKKKLQVLDQKDTDRKRTAELKNNLEGYIYSTKEKIETLENFEKVSTSEERQSFIEKLDQVQDWLYTDGEDANAAEFQERLDQLKAVGDPIFLRLKELTARPAAVEHARKYIDELKQIVEEWKAKKPWLPQERVDEVIESSEKLKNWLGEKEDEQKKTSGFSKPAFTSEEVYLKVLDLQNKVASINRISKPKVQKPEKNETESNEQNPDDSNSTSTENSSSSDSSADSSEGANQETVTEQPEGHDEL 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00821 892 SUPERFAMILY Actin-like ATPase domain 24 211 IPR043129 -
Vimu6g00821 892 PANTHER HSC70CB, ISOFORM G-RELATED 22 863 - -
Vimu6g00821 892 FunFam Heat shock 70 kDa protein 4 266 351 - -
Vimu6g00821 892 Gene3D - 27 417 - -
Vimu6g00821 892 MobiDBLite consensus disorder prediction 567 607 - -
Vimu6g00821 892 Pfam Hsp70 protein 25 738 IPR013126 GO:0005524|GO:0140662
Vimu6g00821 892 ProSitePatterns Heat shock hsp70 proteins family signature 3. 373 387 IPR018181 -
Vimu6g00821 892 FunFam Heat shock 70 kDa protein 4 638 750 - -
Vimu6g00821 892 MobiDBLite consensus disorder prediction 567 615 - -
Vimu6g00821 892 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 665 747 IPR029048 -
Vimu6g00821 892 MobiDBLite consensus disorder prediction 851 883 - -
Vimu6g00821 892 CDD HYOU1-like_NBD 26 417 - -
Vimu6g00821 892 Gene3D Actin; Chain A, domain 4 266 351 - -
Vimu6g00821 892 PRINTS 70kDa heat shock protein signature 23 36 - -
Vimu6g00821 892 PRINTS 70kDa heat shock protein signature 370 386 - -
Vimu6g00821 892 PRINTS 70kDa heat shock protein signature 166 186 - -
Vimu6g00821 892 PRINTS 70kDa heat shock protein signature 55 67 - -
Vimu6g00821 892 PRINTS 70kDa heat shock protein signature 402 422 - -
Vimu6g00821 892 Gene3D - 638 754 IPR029048 -
Vimu6g00821 892 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 427 571 IPR029047 -
Vimu6g00821 892 Gene3D - 90 146 - -
Vimu6g00821 892 SUPERFAMILY Actin-like ATPase domain 218 419 IPR043129 -
Vimu6g00821 892 Coils Coil 750 770 - -
Vimu6g00821 892 Gene3D - 212 399 - -
Vimu6g00821 892 MobiDBLite consensus disorder prediction 836 850 - -
Vimu6g00821 892 MobiDBLite consensus disorder prediction 830 892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00821 Vimu-Chr6 9149900 9160851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00821 20 544 Calmodulin-binding Proteins AT3G12580 27.205 3.72e-59 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00821 K09486 - gmx:100786898 1497.64