Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00813 ATGCAGTTTTCGGTTTCCAATTTCCATCCTGTTATTTATGTTTTGGTGTTTATAGGCTCTGTTCTGAAGTTGGGATACGCGTCGTCTGCAGCATCGCAGCTTCAATTGGAAGCAAACGCTATAATCAATAGCGGGTGGTGGGATCTGTCGCACTCACAGTCACTTCATATATGTTCATTGATTGATGGTATACATTGCAATGACGTTGGAAGTGTAATTGGTATCACATATCTGTATTCCGAGCGACCCATTCAATTAGCAAATCTAAACCTTTCTGCTTTTAAGAATTTGGAACGTCTTGAGGTCTCCTTCTGTGGTCTAGAAGGGATTATTCCATCTGAAATTGGTAGACTTTCCAAACTTACTTATCTTGATTTATCTCATACTTCTATTCATGGAGAGATACCTCCTACAATAGGAAATCTTTTCAATCTCACTTATCTCGATTTCTCCTACGATTCTATTTACGGTCAGGTACCTCCTTCAATGGGAAATCTAATCCAACTATCCACACTTATCATTTCTAACAATTACATTGAAGGCCCAATTCCTTTTGAATTGTCATTCTTGAAGAGTCTTACTATCATTGATCTATCTTACAACAAAATCAATGGAGCTTTGCCTATTTCACTTTCAAACCTCATGAACCTTCAAAATATTGACATTTCACACAATCTACTCACTGGTTCCCTTGAACCTTTCTCAGTCGGATATTTTCCCTTTTTGAAAAGTCTGGATCTAAGTTTCAATAGTCTTATCGGAGAAATTCCTCTGTCCCTACATAATGTCCACTATGTGGACATTTCCTTCAACAATTTGAAGGGTCCCATTCCAAACGGTGTACATCCATATGCGCTAATGGGAAACAAGGGTGTATGCAGCAACATTACAAAAATACGAATCCAATACCAATTCCGGCCTTGTTTAGTCAGTCAGAAGAAACGAAGGCAACTGATCATCATAATTCCTACTATCACCATATTTCTAATCATGATCTTCTTACTACTTCTATATTTGAGGCACAATCGCATTACAATCAAGAACAAACATTCAAGGATAAGTAAAACATCTAAGAATGGGGACTTGTTCTGCATATGGAACTATGACGGAAGCATAGCCTATGAAGATATCATTATAGTTACCGAAGACTTTGACCTCAAATACTGTATTGGAACAGGTGCGTACGGAAGTGTTTATAAGGCTAAACTACCAAGTGGCAAGATTGTTGCGGTGAAAAAACTCCATGGCTTTGAAGCAGAGGTTCCCACTTTTGATGAGAGTTTCAGAAACGAAGCTAAAGTATTATCGAAAATAAAGCATCGACATATAGTCAAGCTCCATGGATTTTGCTTGCACAAAAGAATAATGTTTTTGATTTATGAGTACATGGAGAAAGGAAGCTTGTTTTCTGTGTTGTTCGATGACATGAAAGCAATGGAATTGGATTGGAAAAAGAGGGTTAATATAGTGAAGGGCACTGCTCATGCTCTCTCATATCTCCATCATGATTGTGTCCCTCCTATAGTGCATAGAGACATATCAACAAGCAACATCTTGCTTAACTCCAAGTGGGAGCCCACTGTTTCCGACTTTGGCACAGCTCGATTTCTCAACCTTGATTCATCCAATCGAACTATTGTTGTTGGAACCATTGGATACATAGCACCTGGTAATTTGTTCATGTTTTTCTTTAGTCCTATTTATTTAATTTTTTGGTGCATATGA 1725 0.3797 MQFSVSNFHPVIYVLVFIGSVLKLGYASSAASQLQLEANAIINSGWWDLSHSQSLHICSLIDGIHCNDVGSVIGITYLYSERPIQLANLNLSAFKNLERLEVSFCGLEGIIPSEIGRLSKLTYLDLSHTSIHGEIPPTIGNLFNLTYLDFSYDSIYGQVPPSMGNLIQLSTLIISNNYIEGPIPFELSFLKSLTIIDLSYNKINGALPISLSNLMNLQNIDISHNLLTGSLEPFSVGYFPFLKSLDLSFNSLIGEIPLSLHNVHYVDISFNNLKGPIPNGVHPYALMGNKGVCSNITKIRIQYQFRPCLVSQKKRRQLIIIIPTITIFLIMIFLLLLYLRHNRITIKNKHSRISKTSKNGDLFCIWNYDGSIAYEDIIIVTEDFDLKYCIGTGAYGSVYKAKLPSGKIVAVKKLHGFEAEVPTFDESFRNEAKVLSKIKHRHIVKLHGFCLHKRIMFLIYEYMEKGSLFSVLFDDMKAMELDWKKRVNIVKGTAHALSYLHHDCVPPIVHRDISTSNILLNSKWEPTVSDFGTARFLNLDSSNRTIVVGTIGYIAPGNLFMFFFSPIYLIFWCI 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00813 574 ProSitePatterns Protein kinases ATP-binding region signature. 390 413 IPR017441 GO:0005524
Vimu6g00813 574 Pfam Leucine Rich Repeat 242 262 IPR001611 GO:0005515
Vimu6g00813 574 SUPERFAMILY Protein kinase-like (PK-like) 364 561 IPR011009 -
Vimu6g00813 574 PANTHER LEUCINE RICH REPEAT KINASE 2 93 556 - -
Vimu6g00813 574 Gene3D Ribonuclease Inhibitor 31 186 IPR032675 -
Vimu6g00813 574 Gene3D Ribonuclease Inhibitor 187 301 IPR032675 -
Vimu6g00813 574 ProSiteProfiles Protein kinase domain profile. 384 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00813 574 Gene3D Phosphorylase Kinase; domain 1 344 462 - -
Vimu6g00813 574 Gene3D Transferase(Phosphotransferase) domain 1 463 561 - -
Vimu6g00813 574 FunFam Os07g0541700 protein 463 550 - -
Vimu6g00813 574 ProSitePatterns Tyrosine protein kinases specific active-site signature. 508 520 IPR008266 GO:0004672|GO:0006468
Vimu6g00813 574 FunFam Leucine-rich repeat protein kinase family protein 348 462 - -
Vimu6g00813 574 Pfam Leucine rich repeat 168 227 IPR001611 GO:0005515
Vimu6g00813 574 Pfam Protein kinase domain 389 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00813 574 FunFam Leucine-rich repeat receptor protein kinase EMS1 88 186 - -
Vimu6g00813 574 SUPERFAMILY L domain-like 60 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00813 Vimu-Chr6 9060652 9062376 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00813 107 560 Receptor kinase-like Gene Family AT4G08850 40.977 2.25e-106 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu6g00813 Pkinase 1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00813 - - vum:124835364 735.717