Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00811 ATGGTATTGAGTGAACATAATTTAGTGAAACTTCAGTTTCTCATTAAAATAGCTTCTATTAATTACCTCTCTTCCCAAACCATGCAGCTTTTGGTTTCCAATTTCCATCTTGTTATTTATGTTTTGCTTTTCATAGGCTCTGTTTTAGAGTTGAGATCCGCGTCGTCTACAGCATCGCAGCTTCAATTGGAAGCAAACGCTATAATCAATAGTGGATGGTGGAATTTGTCGCACAAAGATTCAACTGATATATGTTCATTGATTGATGATATAAGTTGCAATGATGCTGGAAGTGTAACTCGTATCACATATCTGTATACCAAGCGACGGATTCAATTAGCAACTCTAAACCTTTCCGCTTTCAAGAATTTAGAAACTCTCGAGGTCTGTTACTCTAGTCTAGAAGGGACTATCCCACCTGAAATTGGCAGTATTTCTAAACTAAGCCGTCTTCGTTTGTCTCACAATTATTTTCTTCAAGGTAAAATACCTTTCACAATAGAAAATCTTCTCAATCTTACTTATCTTGATTTATCTTACAATTATCTTCAAGGTAAAATACCTACTGCGATAGGAAGTCTTTTCAAACTCACTCATCTTGATTTATCCTTCAATTTTCTTTGGGGTGAAATATGTCACATAGAAAATATTTCTAAACTCACTCATCTTTATTTGTCCAACAATTCTCTTCAAGGCAAAATACCTTTCACAGTAGAAAATCTTTCCAATCTCACTTATGTTGATTTGTCCCACAATTATTTTCATGGGGAAATCCCTATTAAAATAGGAAATTTTTCCAAACTCATATATCTTGATTTATCTTACAATTTTCTTCAAGGTAAAATACCTACCACGATAGAAAGTCTTTCCAAACTTACTCATCTAAAATTGTCTCACAATTCTATTTTTGGTGAGATACCTCCTACAATAGGAAACCTTTCCAAACTCACTCATCTTGAATTGTCTCACAATTATATTCATGGAGAAATACCTCCTACAATAGGAAATCTTTCCAAACTCACTTATCTTGATTTATCCTACAACTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTTATCTTAATTTATCCTACAATTCTCTTCAAGATAAAATACCTCCATCACTAGGAAATCTTTCAAAACTTACTTATCTTGTTTTATCCTACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTTATCTTGATTTATCCTACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTTACTTATCTTGTTTTATCCTACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTTATCTTGATTTATCTCACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTTATCTTGATTTATCTCACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTCATCTTGATTTATCTCATAATTCTCTTCAAGATGAAATTCCTCCATCACTAGGAAATCTTTCAAAACTCACTTATCTTTATTTATCCAACAATTTTCTTCAAGGTGAAATACCTTCATCATTAGGATATCCCAGAATCCATTACCTGGACCTTTCCTTCAATAATTTGAATGGACCCATTCCAAATGGTGTACGTCCATATGCACTAACGGGGAATAAAGGTGTATGCAGCAACTCTACAAATATACAAATTGAATACCAATTCCAGCCTTGTTCGGTCAACCAGAAGAAACGAAGGCAGCTAGTGATAATTCTTTCCATCACCATATTTCTAATCTTGGCCTTCTTACTACTTTTATGTCTGAGACACATCCGCATTTCAATCAAGAGCAAACATGCAAGGATAACTGAAACATCTAAGAATGGGGACTTGTTCTGCATTTGGAATTATGACGGAAGCATAGCCTATGAAGACATCATTACAGTAACTGAAGACTTTGATCTCAAATATTGTATCGGAACAGGTGCGTATGGAAGTGTCTATAGGGCTCAATTACCTACTGGAAAGATTGTTGCGGTGAAGAAACTCCATGGCTTTGAAGCAGAGGTCCCCACTTTTGATGAGAGTTTCAGAAACGAAGCCAAAGTATTATCGGAAATAAAGCACCGACATATAGTCAAGCTCCATGGATTCTGCTTGCACAAAAGAATAATGTTTTTGATCTATGAGTACATGGAGAAAGGAAGCTTGTTTTCTGTGTTGTTTGATGACATGGAAGCAATGGAATTGGATTGGAAAAGGAGGGTTAACATAGTGAAAGGCACTGCACATGCTCTCTCATATCTCCATCATGATTGTGTCCCTCCAATAGTCCATAGAGACATATCAGCAAGCAACGTCTTGCTTAACTCCAAGTGGGAGCCCACTATTTCCGACTTTGGCACAGCCCGATTTATCAACCTTGATTCGTCCAATCGAACTATAGTTGCTGGAACCATTGGATACATAGCACCTGGTAAATTGTTCATGTTTTTCTCTACTTTTATTTATTTATGA 2583 0.3539 MVLSEHNLVKLQFLIKIASINYLSSQTMQLLVSNFHLVIYVLLFIGSVLELRSASSTASQLQLEANAIINSGWWNLSHKDSTDICSLIDDISCNDAGSVTRITYLYTKRRIQLATLNLSAFKNLETLEVCYSSLEGTIPPEIGSISKLSRLRLSHNYFLQGKIPFTIENLLNLTYLDLSYNYLQGKIPTAIGSLFKLTHLDLSFNFLWGEICHIENISKLTHLYLSNNSLQGKIPFTVENLSNLTYVDLSHNYFHGEIPIKIGNFSKLIYLDLSYNFLQGKIPTTIESLSKLTHLKLSHNSIFGEIPPTIGNLSKLTHLELSHNYIHGEIPPTIGNLSKLTYLDLSYNSLQDEIPPSLGNLSKLTYLNLSYNSLQDKIPPSLGNLSKLTYLVLSYNSLQDEIPPSLGNLSKLTYLDLSYNSLQDEIPPSLGNLSKLTYLVLSYNSLQDEIPPSLGNLSKLTYLDLSHNSLQDEIPPSLGNLSKLTYLDLSHNSLQDEIPPSLGNLSKLTHLDLSHNSLQDEIPPSLGNLSKLTYLYLSNNFLQGEIPSSLGYPRIHYLDLSFNNLNGPIPNGVRPYALTGNKGVCSNSTNIQIEYQFQPCSVNQKKRRQLVIILSITIFLILAFLLLLCLRHIRISIKSKHARITETSKNGDLFCIWNYDGSIAYEDIITVTEDFDLKYCIGTGAYGSVYRAQLPTGKIVAVKKLHGFEAEVPTFDESFRNEAKVLSEIKHRHIVKLHGFCLHKRIMFLIYEYMEKGSLFSVLFDDMEAMELDWKRRVNIVKGTAHALSYLHHDCVPPIVHRDISASNVLLNSKWEPTISDFGTARFINLDSSNRTIVAGTIGYIAPGKLFMFFSTFIYL 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00811 860 SUPERFAMILY RNI-like 222 575 - -
Vimu6g00811 860 FunFam Leucine-rich repeat receptor-like protein kinase TDR 380 601 - -
Vimu6g00811 860 SMART LRR_typ_2 457 480 IPR003591 -
Vimu6g00811 860 SMART LRR_typ_2 170 194 IPR003591 -
Vimu6g00811 860 SMART LRR_typ_2 241 265 IPR003591 -
Vimu6g00811 860 SMART LRR_typ_2 361 384 IPR003591 -
Vimu6g00811 860 SMART LRR_typ_2 505 528 IPR003591 -
Vimu6g00811 860 SMART LRR_typ_2 529 553 IPR003591 -
Vimu6g00811 860 SMART LRR_typ_2 337 360 IPR003591 -
Vimu6g00811 860 SMART LRR_typ_2 433 456 IPR003591 -
Vimu6g00811 860 SMART LRR_typ_2 289 312 IPR003591 -
Vimu6g00811 860 SMART LRR_typ_2 481 504 IPR003591 -
Vimu6g00811 860 SMART LRR_typ_2 313 336 IPR003591 -
Vimu6g00811 860 SMART LRR_typ_2 409 432 IPR003591 -
Vimu6g00811 860 SMART LRR_typ_2 385 408 IPR003591 -
Vimu6g00811 860 Pfam Leucine rich repeat 339 398 IPR001611 GO:0005515
Vimu6g00811 860 Pfam Leucine rich repeat 264 302 IPR001611 GO:0005515
Vimu6g00811 860 Pfam Leucine rich repeat 147 205 IPR001611 GO:0005515
Vimu6g00811 860 Pfam Leucine rich repeat 459 518 IPR001611 GO:0005515
Vimu6g00811 860 Pfam Leucine Rich repeats (2 copies) 219 252 IPR025875 -
Vimu6g00811 860 Gene3D Phosphorylase Kinase; domain 1 636 753 - -
Vimu6g00811 860 ProSiteProfiles Protein kinase domain profile. 675 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00811 860 Pfam Leucine Rich Repeat 531 550 IPR001611 GO:0005515
Vimu6g00811 860 Pfam Leucine Rich Repeat 411 433 IPR001611 GO:0005515
Vimu6g00811 860 Pfam Leucine Rich Repeat 315 337 IPR001611 GO:0005515
Vimu6g00811 860 Gene3D Transferase(Phosphotransferase) domain 1 754 851 - -
Vimu6g00811 860 Pfam Protein kinase domain 680 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00811 860 FunFam Leucine-rich repeat protein kinase family protein 639 753 - -
Vimu6g00811 860 SMART LRR_sd22_2 505 531 - -
Vimu6g00811 860 SMART LRR_sd22_2 313 339 - -
Vimu6g00811 860 SMART LRR_sd22_2 265 291 - -
Vimu6g00811 860 SMART LRR_sd22_2 457 483 - -
Vimu6g00811 860 SMART LRR_sd22_2 409 435 - -
Vimu6g00811 860 SMART LRR_sd22_2 220 243 - -
Vimu6g00811 860 SMART LRR_sd22_2 361 387 - -
Vimu6g00811 860 SMART LRR_sd22_2 194 219 - -
Vimu6g00811 860 Gene3D Ribonuclease Inhibitor 213 279 IPR032675 -
Vimu6g00811 860 ProSitePatterns Protein kinases ATP-binding region signature. 681 704 IPR017441 GO:0005524
Vimu6g00811 860 Gene3D Ribonuclease Inhibitor 280 377 IPR032675 -
Vimu6g00811 860 Gene3D Ribonuclease Inhibitor 378 472 IPR032675 -
Vimu6g00811 860 Gene3D Ribonuclease Inhibitor 56 212 IPR032675 -
Vimu6g00811 860 Gene3D Ribonuclease Inhibitor 473 593 IPR032675 -
Vimu6g00811 860 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 117 379 - -
Vimu6g00811 860 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 300 847 - -
Vimu6g00811 860 ProSiteProfiles Leucine-rich repeat profile. 507 530 IPR001611 GO:0005515
Vimu6g00811 860 ProSiteProfiles Leucine-rich repeat profile. 459 482 IPR001611 GO:0005515
Vimu6g00811 860 FunFam Os07g0541700 protein 754 841 - -
Vimu6g00811 860 ProSiteProfiles Leucine-rich repeat profile. 483 506 IPR001611 GO:0005515
Vimu6g00811 860 PRINTS Leucine-rich repeat signature 460 473 - -
Vimu6g00811 860 PRINTS Leucine-rich repeat signature 481 494 - -
Vimu6g00811 860 SUPERFAMILY L domain-like 93 284 - -
Vimu6g00811 860 ProSitePatterns Tyrosine protein kinases specific active-site signature. 799 811 IPR008266 GO:0004672|GO:0006468
Vimu6g00811 860 SUPERFAMILY Protein kinase-like (PK-like) 658 851 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00811 Vimu-Chr6 9046236 9048818 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00811 39 851 Receptor kinase-like Gene Family AT4G08850 36.034 9.97e-162 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu6g00811 Pkinase 4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00811 - - vum:124822324 834.713