Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00809 ATGCAGTTTTTGCTTTACAATTTCCATCTTTTTATTTATGCTTTGCTTTTTGTGGGCTCTGTTTTACAGTTGGGATGCACGTTGTCTACAGCATCGCAGCTTCAGTTGGAAGCAAACGCTATAATCAATAGTGGATGGTGGAATCTGTCGCACTCAGATTCAATTTATGATATATGTTCATGGATTGTTGGTATAACTTGCAATGATGCTGGAAGTGTAACTCATATCACATATATGTATGAGGAAAGGCCTATTCAATTGGCAACACTAAACCTCTCTGCTTTCAAGAATCTGGAACATCTTGAGGTAGTCAAATCTAGTCTAAACGGGACTATTCCATCTGAAATTGGAAATCTTTCCAATCTCCGTTTTCTTGATTTGTCTTACAATTCTTTTCAAGGTAAAATACCTTCATCATTAGAAAATCTTTCAAAACTCACTTATCTTAATTTATCTCATAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTCATTTACCTTGATTTATCGCACAATTCTCTTCAAGGTGAAATACCTTCATCACTAGGATATCTAACCAATCTATTGACCCTAATATTCTCTAACAACAAAATCAATGGAACCTTTTCCATTTCACTTTTAAACATCATGTACCTTCAAAATATTGACATTTCACACAATCTACTAACTGGTTCCCTTGAACCTTTCTCAGTTAAATATTTTCCACTCTTGAAAAGTCTAGATCTAAGCTATAATGGTATTTCCCGAGCGGTTCCTATGCTCCTTTGTGATATCCTTTACCTAAACCTTTCCTTCAATAATTTGAATGGTCCCATTCCATATTGTGTAAGTCCATATGCACTAATGGGGAATAACGGTGTATGCAGCAACATTCCAGACATACAAATCGAATTCCAATTCCAGCCCTGTCCTGACAGCCAAAAGAAACGAAGGACACTGGTCATAATTCTTTCTATCACCATATTTCTATTCCTGGCCTTCTTTCTACTTTTATATCTGAGGCACAATCGCATTGCAATCAAGAACAAACATGCAAGGATAACTGAAACATCTAAGAATGGGGACTTGTTCTGCATTTGGAATTATGACGGAGGCATAGCCTATGAAGACATCATTAGAGTAACTGAAGACTTTGATCTTAAATATTGTATCGGAACGGGTGGGTATGGAAGTGTCTATAGGGCTCAATTACCAAGTGGAAAGATTGTTGCGGTGAAGAAACTCCATGGCTTTGAAGCAGAGGTCCCCACTTTTGATGAGAGTTTCAGAAACGAAGCCAAAGTATTATCGGAAATAAAGCACCGAAATATAGTCAAGCTCCATGGATTCTGCTTGCACAAAAGAATGATGTTTTTGATCTATGAGTACATGGAGAAAGGAAGCTTGCTTTCTGTGTTGTTTGATGACAGGGAAGCAATAAAATTTGATTGGAAAAAGAGGGTTAACACAGTGAAAGGAACTGCACATGCTCTCTCATATCTCCATCATGATTGCGTCCCTCCAATAGTGCATAGAGACATATCAGCAAGCAACGTATTGCTTAACTCCAAGTGGGAGCCCATTGTTTCCGACTTTGGCACAGCCCGATTTCTCAACCTTGATTCATCCAATCGAACTATAGTTGCTGGAACCATTGGATACATAGCACCTGGTAAATTGCTCATGTTTTTCTCTACTTTTATTTATTTGATTTAG 1713 0.3748 MQFLLYNFHLFIYALLFVGSVLQLGCTLSTASQLQLEANAIINSGWWNLSHSDSIYDICSWIVGITCNDAGSVTHITYMYEERPIQLATLNLSAFKNLEHLEVVKSSLNGTIPSEIGNLSNLRFLDLSYNSFQGKIPSSLENLSKLTYLNLSHNSLQDEIPPSLGNLSKLIYLDLSHNSLQGEIPSSLGYLTNLLTLIFSNNKINGTFSISLLNIMYLQNIDISHNLLTGSLEPFSVKYFPLLKSLDLSYNGISRAVPMLLCDILYLNLSFNNLNGPIPYCVSPYALMGNNGVCSNIPDIQIEFQFQPCPDSQKKRRTLVIILSITIFLFLAFFLLLYLRHNRIAIKNKHARITETSKNGDLFCIWNYDGGIAYEDIIRVTEDFDLKYCIGTGGYGSVYRAQLPSGKIVAVKKLHGFEAEVPTFDESFRNEAKVLSEIKHRNIVKLHGFCLHKRMMFLIYEYMEKGSLLSVLFDDREAIKFDWKKRVNTVKGTAHALSYLHHDCVPPIVHRDISASNVLLNSKWEPIVSDFGTARFLNLDSSNRTIVAGTIGYIAPGKLLMFFSTFIYLI 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00809 570 ProSitePatterns Protein kinases ATP-binding region signature. 390 413 IPR017441 GO:0005524
Vimu6g00809 570 SUPERFAMILY Protein kinase-like (PK-like) 367 561 IPR011009 -
Vimu6g00809 570 FunFam Os07g0541700 protein 463 550 - -
Vimu6g00809 570 PANTHER LEUCINE RICH REPEAT KINASE 2 92 556 - -
Vimu6g00809 570 Gene3D Phosphorylase Kinase; domain 1 345 462 - -
Vimu6g00809 570 Pfam Leucine Rich repeat 243 254 IPR001611 GO:0005515
Vimu6g00809 570 Gene3D Transferase(Phosphotransferase) domain 1 463 561 - -
Vimu6g00809 570 Gene3D Ribonuclease Inhibitor 184 301 IPR032675 -
Vimu6g00809 570 ProSiteProfiles Leucine-rich repeat profile. 145 168 IPR001611 GO:0005515
Vimu6g00809 570 SUPERFAMILY L domain-like 41 281 - -
Vimu6g00809 570 ProSiteProfiles Protein kinase domain profile. 384 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00809 570 ProSitePatterns Tyrosine protein kinases specific active-site signature. 508 520 IPR008266 GO:0004672|GO:0006468
Vimu6g00809 570 FunFam Nuclear pore complex protein NUP107 27 170 - -
Vimu6g00809 570 Pfam Leucine Rich Repeat 169 189 IPR001611 GO:0005515
Vimu6g00809 570 SMART LRR_typ_2 240 263 IPR003591 -
Vimu6g00809 570 SMART LRR_typ_2 119 142 IPR003591 -
Vimu6g00809 570 SMART LRR_typ_2 167 191 IPR003591 -
Vimu6g00809 570 SMART LRR_typ_2 143 166 IPR003591 -
Vimu6g00809 570 Gene3D Ribonuclease Inhibitor 28 183 IPR032675 -
Vimu6g00809 570 Pfam Protein kinase domain 389 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00809 570 FunFam Leucine-rich repeat protein kinase family protein 348 462 - -
Vimu6g00809 570 Pfam Leucine rich repeat 97 156 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00809 Vimu-Chr6 9036870 9038582 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00809 106 559 Receptor kinase-like Gene Family AT4G08850 41.702 1.25e-108 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu6g00809 Pkinase 8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00809 - - vum:124835364 805.053