Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00807 ATGGGGGCAAAACCTTGTGGAATTCTTTGCACTAATGGAATGCTTAGCGTCAATGGCGGGGCAAAAGGCTTATCACAGTATTATAAGAATCAGCAGAGTGGTGGCATGCTTTTGGTTTCAAATTTCCATCTTCTTATCTATGTTTTCGTTTTTATGGGCTCTACTTTTGAGTTGGGATGCGCGTCTACAGCATCGCAGGTTCAGTTGGAAGCAAACGCTATAATGAATAGTGGATGGTGGCACCTGTCCCCTTCACATTCACTTCATATCTGTTCATGGATTGATGGTATAAGTTGTAATGATGCTGGAAGTGTCACTCGTATCACATATATGTATGAGGAAGGGCCTATTCAATTGGCAACACTAAACCTCTCTGCTTTCAAGAATCTGGAACATCTTCAGGACTTTGATCTCAAATATTGTATCGGAACAGGTGCGTATGGGAGTGTCTATAGGGCACAATTACCAAGTGGAAAGATTGTTGCAGTGAAGAAACTCCATGGCTTTGAAGCAGAGGTCCCCACTTTTGATGAGAGTTTCAGAAATGAAGCCAAAGTATTTCAAGCTCCATGGATTCTGCTTGCACAAAAGAATGATTTTTTGATTTATGAGTATATGGAGAAAGGAAGCTTGCTTTCTGTGTTGTTTGATGACATGGAAGCAATAGAATTTGATTGGAAAAAGAGGGTTAACACTGTGAAAGGATCTGCACATGCTTTCTCATATCTCCATCATGATTGTGTCCCTCCAATAGTGCATAGAGACATATTAGCAAGCAACATCTTGCTTAACTACAAGTGGGAGCCCACTGTTTCTGACTTTGGCACAGCCCGATTTCTCAACCTTGATTCATCCAATCGAACTATAGTTGCTGGAACCATTGGATACATAACACCTGATAAATTCTTCGGAGTGGTGGCACTAGAAACTTTGATGGGAAAACATCCTAAAGAAATACTCTCATCACTTCAATCAACTTGTACTGATGATGACATCAAATTATGCGATATATTGGATCAACGCCTCTCGCACCCAACATTCTAA 1044 0.4071 MGAKPCGILCTNGMLSVNGGAKGLSQYYKNQQSGGMLLVSNFHLLIYVFVFMGSTFELGCASTASQVQLEANAIMNSGWWHLSPSHSLHICSWIDGISCNDAGSVTRITYMYEEGPIQLATLNLSAFKNLEHLQDFDLKYCIGTGAYGSVYRAQLPSGKIVAVKKLHGFEAEVPTFDESFRNEAKVFQAPWILLAQKNDFLIYEYMEKGSLLSVLFDDMEAIEFDWKKRVNTVKGSAHAFSYLHHDCVPPIVHRDILASNILLNYKWEPTVSDFGTARFLNLDSSNRTIVAGTIGYITPDKFFGVVALETLMGKHPKEILSSLQSTCTDDDIKLCDILDQRLSHPTF 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00807 347 Pfam Protein kinase domain 141 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00807 347 ProSiteProfiles Protein kinase domain profile. 136 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00807 347 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524
Vimu6g00807 347 SUPERFAMILY Protein kinase-like (PK-like) 125 322 IPR011009 -
Vimu6g00807 347 Gene3D Transferase(Phosphotransferase) domain 1 120 344 - -
Vimu6g00807 347 FunFam Os07g0541700 protein 206 293 - -
Vimu6g00807 347 PANTHER LEUCINE RICH REPEAT KINASE 2 42 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00807 Vimu-Chr6 9031829 9034770 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00807 135 303 Receptor kinase-like Gene Family AT4G08850 48.619 3.37e-45 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu6g00807 Pkinase 2.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00807 - - vum:124822324 355.91