Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00806 ATGCAGCTTTTGGTTTCCATTTTCCATCTTTTTATTTATGCTTTGCTTTTTATGGGCTCTGTTTTACAGTTGGGATGTGCGTCTACACCATCGCAGCTTCAGTTCGAAGCAAACGCTATAACCAATAGTGGATGGTGGAATCTGTCGCACTCAGATTCAAATGATATGTGTTCATTGATTGATATTCGTTGCAATGATGCAGGAAGTGTAACTCGTATCACATTTAAGTATTCCAGACGACCGATTCAATTATCAACACTAAACCTCTCTGCTTTCAAGAACTTGGAACAACTTGAGGTCGTCAAATCTAGTCTAAACGGGACTATTCCATCTGAAATTGGAAATCTTTCCAATCTCCGTCTTCTTAATTTATCCCATAATTCTCTTCAAGATGAAATACCTTCATCACTAGGAAATCTTTCAAAACTCACTTATCTTTATTTATCTCACAATTTTCTTCAAGATGAAATTCCTCAATCACTAGGAAATCTTTCAAAACTCACTTATCTTGATTTATCCTACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTTCTCTTGATTTATCCTACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTTACTTTTCTTGTTTTATCCTACAATTCTCTTGTAGGTAAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTTCTCTTGATTTATCCTACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTTATCTTGATTTATCCTACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTTACTTATCTTGTTTTATCCTACAATTCTCTTCAAGATGAAATACCTCCATCACTAGAAAATCTTTCAAAACTCACTTATCTTGATTTATCTCACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTTATCTTGATTTATCCTACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTTACTTATCTTGTTTTATCCTACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTTATCTTGATTTTTCTCACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTCATCTTGATTTATCCTACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTTACTTATCTTGTTTTATCCTACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTTATCTTGATTTATCTCACAATTCTCTTCAAGATGAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTTATCTTGTTTTATCCTACAATTCTCTTGTAGGTAAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTCATCTTGATTTATCTCATAATTCTCTTCAAGATGAAATTCCTCCATCACTAGGAAATCTTTCAAAACTCACTTATCTTTATTTATCCAACAATTTTCTTCAAGGTGAAATACCTTCATCATTAGGATATCCCACAATCCATTACCTGGACCTTTCCTTCAATAATTTGAATGGACCCATTCCAAATGGTGTACGTCCATATGCACTAATGGGGAATAAAGGTGTATGCAGCAACTCTACAAATATACAAATTGAATACCAATTCCAGCCTTGTTCGGTCAACCAGAAGAAACGAAGGCAGCTAGTGATAATTCTTTCCATCACCATATTTCTAATCTTGGCCTTCTTACTACTTTTATGTCTGAGACACATCCGCATTTCAATCAAGAGCAAACATGCAAGGATAACTGAAACATCTAAGAATGGGGACTTGTTCTGCATTTGGAATTATGACGGAAGCATAGCCTATGAAGACATCATTACAGTAATTGAAGACTTTGATCTCAAATATTGTATCGGAACAGGTGCGTATGGAAGTGTCTATAGGGCTCAATTACCTACTGGAAAGATTGTTGCGGTGAAGAAACTCCATGGCTTTGAAGCAGAGGTCCCCACTTTTGATGAGAGTTTCAGAAACGAAGCCAAAGTATTATCGGAAATAAAGCACCGACATATAGTCAAGCTCCATGGATTCTGCTTGCACAAAAGAATAATGTTTTTGATCTATGAGTACATGGAGAAAGGAAGCTTGTTTTCTGTGTTGTTTGATGACATGGAAGCAATGGAATTGGATTGGAAAAGGAGGGTTAACATAGTGAAAGGCACTGCACATGCTCTCTCATATCTCCATCATGATTGTGTCCCTCCAATAGTCCATAGAGACATATCAGCAAGCAACGTCTTGCTTAACTCCAAGTGGGAGCCCACTATTTCCGACTTTGGCACAGCCCGATTTATCAACCTTGATTCGTCCAATCGAACTATAGTTGCTGGAACCATTGGATACATAGCACCTGGTAAATTGTTCATGTTTTTCTCTACTTTTATTTATTTATGA 2568 0.3548 MQLLVSIFHLFIYALLFMGSVLQLGCASTPSQLQFEANAITNSGWWNLSHSDSNDMCSLIDIRCNDAGSVTRITFKYSRRPIQLSTLNLSAFKNLEQLEVVKSSLNGTIPSEIGNLSNLRLLNLSHNSLQDEIPSSLGNLSKLTYLYLSHNFLQDEIPQSLGNLSKLTYLDLSYNSLQDEIPPSLGNLSKLTSLDLSYNSLQDEIPPSLGNLSKLTFLVLSYNSLVGKIPPSLGNLSKLTSLDLSYNSLQDEIPPSLGNLSKLTYLDLSYNSLQDEIPPSLGNLSKLTYLVLSYNSLQDEIPPSLENLSKLTYLDLSHNSLQDEIPPSLGNLSKLTYLDLSYNSLQDEIPPSLGNLSKLTYLVLSYNSLQDEIPPSLGNLSKLTYLDFSHNSLQDEIPPSLGNLSKLTHLDLSYNSLQDEIPPSLGNLSKLTYLVLSYNSLQDEIPPSLGNLSKLTYLDLSHNSLQDEIPPSLGNLSKLTYLVLSYNSLVGKIPPSLGNLSKLTHLDLSHNSLQDEIPPSLGNLSKLTYLYLSNNFLQGEIPSSLGYPTIHYLDLSFNNLNGPIPNGVRPYALMGNKGVCSNSTNIQIEYQFQPCSVNQKKRRQLVIILSITIFLILAFLLLLCLRHIRISIKSKHARITETSKNGDLFCIWNYDGSIAYEDIITVIEDFDLKYCIGTGAYGSVYRAQLPTGKIVAVKKLHGFEAEVPTFDESFRNEAKVLSEIKHRHIVKLHGFCLHKRIMFLIYEYMEKGSLFSVLFDDMEAMELDWKRRVNIVKGTAHALSYLHHDCVPPIVHRDISASNVLLNSKWEPTISDFGTARFINLDSSNRTIVAGTIGYIAPGKLFMFFSTFIYL 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00806 855 FunFam Os07g0541700 protein 749 836 - -
Vimu6g00806 855 SMART LRR_sd22_2 404 430 - -
Vimu6g00806 855 SMART LRR_sd22_2 236 262 - -
Vimu6g00806 855 SMART LRR_sd22_2 332 358 - -
Vimu6g00806 855 SMART LRR_sd22_2 284 310 - -
Vimu6g00806 855 SMART LRR_sd22_2 500 526 - -
Vimu6g00806 855 SMART LRR_sd22_2 452 478 - -
Vimu6g00806 855 SMART LRR_sd22_2 380 399 - -
Vimu6g00806 855 SMART LRR_sd22_2 140 166 - -
Vimu6g00806 855 SMART LRR_sd22_2 188 214 - -
Vimu6g00806 855 Pfam Leucine Rich repeats (2 copies) 502 539 IPR025875 -
Vimu6g00806 855 FunFam Leucine-rich repeat protein kinase family protein 634 748 - -
Vimu6g00806 855 ProSitePatterns Protein kinases ATP-binding region signature. 676 699 IPR017441 GO:0005524
Vimu6g00806 855 ProSiteProfiles Leucine-rich repeat profile. 454 477 IPR001611 GO:0005515
Vimu6g00806 855 Gene3D Transferase(Phosphotransferase) domain 1 749 846 - -
Vimu6g00806 855 ProSiteProfiles Protein kinase domain profile. 670 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00806 855 Gene3D Ribonuclease Inhibitor 276 372 IPR032675 -
Vimu6g00806 855 Gene3D Ribonuclease Inhibitor 181 275 IPR032675 -
Vimu6g00806 855 Gene3D Ribonuclease Inhibitor 373 467 IPR032675 -
Vimu6g00806 855 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 187 254 - -
Vimu6g00806 855 Pfam Leucine Rich Repeat 478 500 IPR001611 GO:0005515
Vimu6g00806 855 Pfam Leucine Rich Repeat 334 356 IPR001611 GO:0005515
Vimu6g00806 855 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 349 842 - -
Vimu6g00806 855 ProSiteProfiles Leucine-rich repeat profile. 118 141 IPR001611 GO:0005515
Vimu6g00806 855 ProSitePatterns Tyrosine protein kinases specific active-site signature. 794 806 IPR008266 GO:0004672|GO:0006468
Vimu6g00806 855 SUPERFAMILY RNI-like 69 346 - -
Vimu6g00806 855 SUPERFAMILY RNI-like 253 563 - -
Vimu6g00806 855 ProSiteProfiles Leucine-rich repeat profile. 310 333 IPR001611 GO:0005515
Vimu6g00806 855 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 350 591 - -
Vimu6g00806 855 ProSiteProfiles Leucine-rich repeat profile. 502 525 IPR001611 GO:0005515
Vimu6g00806 855 Gene3D Ribonuclease Inhibitor 31 180 IPR032675 -
Vimu6g00806 855 Gene3D Ribonuclease Inhibitor 468 589 IPR032675 -
Vimu6g00806 855 Pfam Leucine rich repeat 358 417 IPR001611 GO:0005515
Vimu6g00806 855 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Vimu6g00806 855 Pfam Leucine rich repeat 190 249 IPR001611 GO:0005515
Vimu6g00806 855 Pfam Leucine rich repeat 262 321 IPR001611 GO:0005515
Vimu6g00806 855 Pfam Leucine rich repeat 425 465 IPR001611 GO:0005515
Vimu6g00806 855 SUPERFAMILY Protein kinase-like (PK-like) 653 846 IPR011009 -
Vimu6g00806 855 FunFam Leucine-rich repeat receptor protein kinase EMS1 255 349 - -
Vimu6g00806 855 Gene3D Phosphorylase Kinase; domain 1 631 748 - -
Vimu6g00806 855 FunFam Nuclear pore complex protein NUP107 29 179 - -
Vimu6g00806 855 PRINTS Leucine-rich repeat signature 452 465 - -
Vimu6g00806 855 PRINTS Leucine-rich repeat signature 311 324 - -
Vimu6g00806 855 SMART LRR_typ_2 428 451 IPR003591 -
Vimu6g00806 855 SMART LRR_typ_2 308 331 IPR003591 -
Vimu6g00806 855 SMART LRR_typ_2 140 163 IPR003591 -
Vimu6g00806 855 SMART LRR_typ_2 116 139 IPR003591 -
Vimu6g00806 855 SMART LRR_typ_2 356 379 IPR003591 -
Vimu6g00806 855 SMART LRR_typ_2 188 212 IPR003591 -
Vimu6g00806 855 SMART LRR_typ_2 380 403 IPR003591 -
Vimu6g00806 855 SMART LRR_typ_2 404 427 IPR003591 -
Vimu6g00806 855 SMART LRR_typ_2 500 523 IPR003591 -
Vimu6g00806 855 SMART LRR_typ_2 452 476 IPR003591 -
Vimu6g00806 855 SMART LRR_typ_2 332 355 IPR003591 -
Vimu6g00806 855 SMART LRR_typ_2 260 283 IPR003591 -
Vimu6g00806 855 SMART LRR_typ_2 236 259 IPR003591 -
Vimu6g00806 855 SMART LRR_typ_2 524 548 IPR003591 -
Vimu6g00806 855 SMART LRR_typ_2 164 187 IPR003591 -
Vimu6g00806 855 SMART LRR_typ_2 284 307 IPR003591 -
Vimu6g00806 855 Pfam Protein kinase domain 675 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00806 Vimu-Chr6 9024221 9026788 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00806 89 846 Receptor kinase-like Gene Family AT4G08850 40.704 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu6g00806 Pkinase 4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00806 - - vum:124822324 850.892