Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00793 ATGGCTGAAAAAGATGATGTTGGGTTGAGTTTGAGTTTGAGTTTGGGAGTCAATCAACACTCTTTCAAGGTGAATCACATGCACCACCCTCAACAACAACAACAACTGCTGCATCAACCCCAACCTGTTCCCATAAACCACAACAAAACTCTCTTTGCTGATTTGTTTCAGTTACCAGATCGGAGCTCCGATGTGATACGAGGAATCGCCGTTAAATCGACGGCAGAATGTGAGGAAGACAACGGCATTTCGTCGCCGAACAGTGCCGTGTCAAGCGTCAGTGGCAGCAAGCGGAGTGAGAGGGACGACGACAATGCTGCTTTGGTGGCCTCTGGAGAGAGGACGTCATGCTCGCGGGGGAGCGATGACGATGATGGTGGCGGCGGAGACTGCGAAGGCGGGAGGAAGAAACTGAGGCTCACGAAAGAACAGTCCATGGTGTTGGAAGAAACGTTCAAGGAGCATAACACACTGAATCCGAAACGAAAGCAAGCTTTGGCAGAGGAGTTGAATTTGAAGCCAAGACAAGTAGAAGTGTGGTTTCAGAACAGAAGGGCAAGAACCAAGTTGAAGCAAACTGAAGTGGATTGTGAATACTTGAAGAGATGTTGTGAGAATTTAACTGAAGACAATAGAAGGTTGCAGAAGGAGGTCCAAGAGCTTAGGGCATTGAAATCATCCCCACAAATGTACATGCACATGAACCCTCCCACCACTCTCACAATGTGCCTCTCTTGTGAGCGTGGTCACTCGTCTTCAACCTCCTCTCCTGCCGCTGTCCACCCGGCGGTGGTGCCGCCGACTTCTCGCAAACTGTTTGGGGCAAACATCCGGCGGCCGGTGGCCGTCAACACTTGGCCGTTTGATGGGTCAATTCCTCGACCATGA 888 0.5056 MAEKDDVGLSLSLSLGVNQHSFKVNHMHHPQQQQQLLHQPQPVPINHNKTLFADLFQLPDRSSDVIRGIAVKSTAECEEDNGISSPNSAVSSVSGSKRSERDDDNAALVASGERTSCSRGSDDDDGGGGDCEGGRKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEDNRRLQKEVQELRALKSSPQMYMHMNPPTTLTMCLSCERGHSSSTSSPAAVHPAVVPPTSRKLFGANIRRPVAVNTWPFDGSIPRP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00793 295 Coils Coil 197 224 - -
Vimu6g00793 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 259 - -
Vimu6g00793 295 SMART halz 191 234 IPR003106 GO:0006355|GO:0043565
Vimu6g00793 295 MobiDBLite consensus disorder prediction 78 95 - -
Vimu6g00793 295 Pfam Homeobox associated leucine zipper 191 225 IPR003106 GO:0006355|GO:0043565
Vimu6g00793 295 SUPERFAMILY Homeodomain-like 117 192 IPR009057 -
Vimu6g00793 295 Gene3D - 139 189 - -
Vimu6g00793 295 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677
Vimu6g00793 295 FunFam Homeobox-leucine zipper protein 18 119 196 - -
Vimu6g00793 295 MobiDBLite consensus disorder prediction 117 138 - -
Vimu6g00793 295 SMART HOX_1 133 195 IPR001356 GO:0003677
Vimu6g00793 295 MobiDBLite consensus disorder prediction 75 138 - -
Vimu6g00793 295 Pfam HD-ZIP protein N terminus 1 102 IPR006712 GO:0005634
Vimu6g00793 295 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981|GO:0006355
Vimu6g00793 295 CDD homeodomain 135 192 IPR001356 GO:0003677
Vimu6g00793 295 Pfam Homeodomain 135 189 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00793 Vimu-Chr6 8938467 8941183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00793 25 248 Homeobox Transcription Factor Family AT3G60390 56.855 4.08e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu6g00793 HD-ZIP_N 1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00793 K09338 - gmx:100819624 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00793 6 8938467 8941183 Vimu6g00793 6 8938467 8941183 ECH
Vimu9g01676 9 25953464 25956069 Vimu6g00793 6 8938467 8941183 PCT