Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00790 ATGAGAATTGCTACTCCTTCTTCCTCGTCTTCCTCGGGTTGTTCGCATTTCTGGTCGTCGGCGCGCCGATCGAAGCGCCTCGCGACGCCGGAGGAGAAGGCCTACCGCGACAGCACCGACCTCGGCCTCTCCCGCCGCCTCGGCGTCATCGACCTTGTACTCCTTGGGATTGGCGCATCCATCGGCGCCGGCATCTTTGTCGTCACCGGCACCGTGGCCCGCGACGCCGGACCCGGAGAACTCATTCTTCGTGGTGGAGATATCTATTCCTCTATTGCAAGGTTTGTTGTTGGACTTGGAGGAGTGACGATAAGTTTTATACTTGCGGGAGCATCGTGTGTTATAAATGCACTCTGTTATGCTGAACTAGCTTCTCGTTTTCCCGCTGTTGTGGGAGGAGCTTATCTATATACATACACAGCTTTTAATGAACTTACGGCTTTTCTTGTTTTTGCACAATTAATGCTTGACTATCACATTGGAGCAGCGAGTATTGCCAGAAGCCTTGCAAGTTATCTGATAAATATTCTAGAACTCTTTCCTGTTTTCAAAGATAACATTCCAAATTGGATTGGGCATGGTGAAAGCATTGGAGATGTGTTATCCATCAATATCTTGGCTCCTATTCTGCTAATACTTCTCACTTTAGTTCTATGTCTAGGTGTTCATGAATCGTCAATTGTGAATTGTATTATGACAGTGACCAAGGTAATCATTGTTATCATTGTCATTTTTGCTGGAGCATTTGAGGTTGATGTTTCCAACTGGTCTCCCTTTGCTCCAAATGGTTTAAAATCTATATTTACAGGAGCTACAGTAGTCTTCTTTGCATATGTTGGTTTTGATGCAGTTGCCAATTCTGCCGAAGAATCTAAGAGGCCTCAGCGGGATTTGCCAATTGGCATAATAGGAAGCCTCTTAGTATGTATTGCATTGTACATTGGAGTATGCTTGGTTATTACTGGAATGGTTCCATACAATCTTCTAGGAGAAGATGCTCCTCTGGCTGAAGCTTTTACATCCAAGGGATTAAAATTTGTTTCTGTTCTGATTAGCATTGGTGCTGTTGCCGGACTTACAACAACACTCCTTGTTGGTCTCTATGTTCAGTCTCGGTTATATCTCGGGATTGCCAGGGATGGCTTACTACCCTCAATATTTGCAAGAGTTCACTCCATACGCCACACCCCTATTCATTCTCAGATCTGGGTTGGCTTGGTTGCCAGTGTTTTGGGTGGGCTGTTGGATGTGCGTGTGCTCTCTCACATTCTTTCCGTTGGTACACTGACTGGATATTCAGTTGTCTCAGCATGTGTTGTTGTACTTCGCTGGAAGGATAAGAAAGGTAGTCAAGTGTCGTCTTCTGCTGAGCGAGAAGGTGTAATTTGCCTCATTGTCGTTGCTCTTTGTGGATTTGCTACTGGGCTCTTGTACCGTTATGATGCTTCATTTATTTTTCTGATTCTCACCATAGTTATCGCAGCCGGTGCTTCTGCTGCTCTTGTTTTCCGTCAGGTTTACGCAAATGCACCAGGGTTTTCCTGCCCAGGGGTTCCCATTCTGCCAAATATCTGCATATTTTTCAACATGTTCTTATTTGGCCAGTTGCACGAAGAGGCATGGGTGAGATTTGTGGTTCTTTGTATTGTCATGATTGGTGTTTATGCAATATATGGCCAGTATCATGCGAACCCCAGTGCAGAAGATAATATATATATTGAGGCACCGGTGGAAGAAGATCCATGA 1746 0.4507 MRIATPSSSSSSGCSHFWSSARRSKRLATPEEKAYRDSTDLGLSRRLGVIDLVLLGIGASIGAGIFVVTGTVARDAGPGELILRGGDIYSSIARFVVGLGGVTISFILAGASCVINALCYAELASRFPAVVGGAYLYTYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYLINILELFPVFKDNIPNWIGHGESIGDVLSINILAPILLILLTLVLCLGVHESSIVNCIMTVTKVIIVIIVIFAGAFEVDVSNWSPFAPNGLKSIFTGATVVFFAYVGFDAVANSAEESKRPQRDLPIGIIGSLLVCIALYIGVCLVITGMVPYNLLGEDAPLAEAFTSKGLKFVSVLISIGAVAGLTTTLLVGLYVQSRLYLGIARDGLLPSIFARVHSIRHTPIHSQIWVGLVASVLGGLLDVRVLSHILSVGTLTGYSVVSACVVVLRWKDKKGSQVSSSAEREGVICLIVVALCGFATGLLYRYDASFIFLILTIVIAAGASAALVFRQVYANAPGFSCPGVPILPNICIFFNMFLFGQLHEEAWVRFVVLCIVMIGVYAIYGQYHANPSAEDNIYIEAPVEEDP 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00790 581 Pfam Amino acid permease 47 473 IPR002293 GO:0016020|GO:0022857|GO:0055085
Vimu6g00790 581 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 39 562 - -
Vimu6g00790 581 Gene3D Amino acid/polyamine transporter I 43 497 - -
Vimu6g00790 581 Pfam C-terminus of AA_permease 513 562 IPR029485 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00790 Vimu-Chr6 8901420 8906348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00790 9 506 Organic Solute Cotransporters AT1G05940 68.588 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00790 K03294 - gmx:100804988 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00790 6 8901420 8906348 Vimu6g00790 6 8901420 8906348 ECH
Vimu8g01011 8 17259804 17263189 Vimu6g00790 6 8901420 8906348 PCT