Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00788 ATGAATCGTAGAGTGAGGAGGAAAGTGGCAAGGAAAAGTAAAGGGAATGTGGTGCAATCTAGTTCCCCTGAAGTTCAGGAGGAGGTTTTGCATTTGGAACCCCAAGGAGTTGTTGATTGGAACTGCTTGCCTGATGACACAGTAATTCAGCTGTTGTCATGTCTGAGTTACCGAGATCGAGCTAGCTTGTCGTCAACTTGTAAAACATGGAGGTCTCTTGGTAGCTCCCCGTGTCTGTGGACTTCTCTGGATCTTCGTTCGCACAGGTTTGATGCTGACATGGCTTCATCACTTGCTCCCAGGTGTGTGCATCTACAGAAGCTCAGGTTTCGGGGGGAGGAATCTGCTAATGCAATAATTCATCTTCGAGCTAAGAACTTGCGTGAATTGAGCGGTGACTATTGCAGGAAGATTAGTGATGCAACTCTTTCAGTGATTGTAGCTCGGCATGAGTCACTTGAGAGCCTTCAGCTTGGACCAGATTTTTGTGAGAGAATAAGTAGTGATGCTATTAAAGCAATAGCTCATTGCTGTCCTAACTTGAGTAAGCTCAGACTCTCGGGTATCAGGGATGTAAATGGTGATGCTATTAATGTTTTGGCTAAGCATTGTCCAAAGTTGACTGATATTGGTTTCATTGACTGTCTGAATGTTGACGAGGTTGCACTGGGAAATGTATTATCAGTTCGTTTCCTTTCTGTGGCGGGGACTTCAAGTATGAAGTGGGGTGTTGTTTCCCATCTTTGGCATAAACTTCCTAACCTGATTGGATTAGATGTTTCAAGAACTGATATTGGACCATCCGCTGTTTTCAGACTGTTATCCTTAACACAGAATTTGAGGGTTTTGATTGCTCTGAATTGTCCTATCCTCGAAGAAGACACTAGCTTTTCTGCTAGTAAATATAAAAACAAGTTATTAGTTTCCCTTCGTACTGATATTTTTAAAGGACTGGCTTCTTTATTTTTTGATAATACAAAGAGAGGAAAAAATGTGTTTTTGGACTGGAGGACCTCAAAGAATAATGATAAGGATCTTAATGAAATTATACCCTGGCTTGAGTGGATGCTGTCTCACACACTTTTGCGTTCTGCTGAGAGTCCTCAGCAGGGTCTTGATAATTTTTGGGTCGAACAAGGTGGAGCACTTTTGCTTAGTCTAATGCAGAGTTCTCAGGAGGATGTTCAAGAGAGGGCAGCCACAGGACTTGCAACTTTTGTTGTAATTGATGACGAAAATGCTAGCATAGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGAGGCATACGCCTCCTACTTGGCCTGGCAAAGTCTTGGAGGGAAGGGCTTCAATCTGAGGCGGCCAAGGCCATTGCAAATTTGTCTGTCAATGCCAATGTGGCCAAAGCTGTTGCAGAAGAAGGTGGGATTGAGATTCTTGCTGGTTTGGCTAGGTCTATGAACAAGCTGGTGGCTGAAGAGGCTGCCGGAGGATTATGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCTATTGCTGAAGCCGGTGGAATACAAGCTTTAGTGGATCTTATCTTCAAGTGGTCCTCTAGTGGAGATGGAGTTTTAGAACGGGCGGCTGGTGCATTGGCTAATTTGGCAGCTGATGACAAGTGTAGTACAGAGGTTGCACTGGCAGGAGGTGTGCATGCTCTGGTGATGCTTGCACGTAAGTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAACTTAGCTGCTCATGGAGATAGTAACAGTAACAATGCTGCCGTTGGACAAGAAGCAGGTGCTCTTGAGGCTCTTGTTCAACTTACTCGTTCTCCCCACGAGGGCGTTAGGCAAGAGGCTGCTGGTGCACTTTGGAATTTGTCATTTGACGATAGAAATCGAGAAGCCATTGCCGCATCTGGTGGAGTTCAGGCCTTGGTTGCTCTTGCCCAAGCTTGTGCTAATGCCTCCCCTGGACTTCAAGAGAGGGCTGCTGGAGCTCTGTGGGGATTATCAGTCTCGGAAACTAATAGTGTTGCCATTGGACGAGAAGGAGGTGTTGCACCTCTGATTGCACTTGCACGGTCTGAAGCAGAGATTCAAGCCACCTTCCACTTTCAGGATGTTCACGAAACTGCTGCAGGGGCACTATGGAATCTTGCTTTCAATGCTAGTAATGCTCTACGAATAGTAGAGGAAGGTGGAGTATCTGCGCTTGTTGATCTCTGTTCTTCATCAGTATCAAAAATGGCACGCTTCATGGCTGCGTTGGCATTGGCTTACATGTTTGACGGGAGAATGGATGAATATGCTTTAGTAGGCACTCCATCTGAAAGTACTTCTAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTTTGAAACACATTGAAGCTTTTGTTCTTATGTTCTCTGATCCACAAGCATTTGCAGCTGCTGCTGCATCATCTGCTCCTGCTGCATTAGCACAGGTTACTGAAGGTGCACGTATTCAAGAAGCGGGACATCTAAGATGCAGTGGTGCTGAAATTGGAAGATTCATCACCATGCTACGAAATCAATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGTTTACAATTCCTGGTGGACGACATGCCATGCACCATGCCAGCCTCATGCAGAACTTGGGAGCACCCCGAGTTCTGCGTGGTGCGGCTGCATCAGCAATCGCCCCACTTGAAGCAAAAATCTTTGCCCGAATTGTTCTTCGGAATCTTGAGTATCACCAGATAGAGCATACAGTGTAG 2781 0.4592 MNRRVRRKVARKSKGNVVQSSSPEVQEEVLHLEPQGVVDWNCLPDDTVIQLLSCLSYRDRASLSSTCKTWRSLGSSPCLWTSLDLRSHRFDADMASSLAPRCVHLQKLRFRGEESANAIIHLRAKNLRELSGDYCRKISDATLSVIVARHESLESLQLGPDFCERISSDAIKAIAHCCPNLSKLRLSGIRDVNGDAINVLAKHCPKLTDIGFIDCLNVDEVALGNVLSVRFLSVAGTSSMKWGVVSHLWHKLPNLIGLDVSRTDIGPSAVFRLLSLTQNLRVLIALNCPILEEDTSFSASKYKNKLLVSLRTDIFKGLASLFFDNTKRGKNVFLDWRTSKNNDKDLNEIIPWLEWMLSHTLLRSAESPQQGLDNFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARKCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAASGGVQALVALAQACANASPGLQERAAGALWGLSVSETNSVAIGREGGVAPLIALARSEAEIQATFHFQDVHETAAGALWNLAFNASNALRIVEEGGVSALVDLCSSSVSKMARFMAALALAYMFDGRMDEYALVGTPSESTSKSVSLDGARRMALKHIEAFVLMFSDPQAFAAAAASSAPAALAQVTEGARIQEAGHLRCSGAEIGRFITMLRNQSSILKACAAFALLQFTIPGGRHAMHHASLMQNLGAPRVLRGAAASAIAPLEAKIFARIVLRNLEYHQIEHTV 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00788 926 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 641 686 IPR000225 GO:0005515
Vimu6g00788 926 SMART LRR_CC_2 204 229 IPR006553 -
Vimu6g00788 926 SMART LRR_CC_2 178 203 IPR006553 -
Vimu6g00788 926 SMART LRR_CC_2 150 177 IPR006553 -
Vimu6g00788 926 SMART LRR_CC_2 124 149 IPR006553 -
Vimu6g00788 926 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 642 IPR000225 GO:0005515
Vimu6g00788 926 SUPERFAMILY RNI-like 39 293 - -
Vimu6g00788 926 PANTHER PROTEIN ARABIDILLO 1 1 923 - -
Vimu6g00788 926 SMART fbox_2 43 83 IPR001810 GO:0005515
Vimu6g00788 926 Gene3D - 481 772 IPR011989 -
Vimu6g00788 926 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 510 555 IPR000225 GO:0005515
Vimu6g00788 926 Gene3D - 359 480 IPR011989 -
Vimu6g00788 926 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Vimu6g00788 926 MobiDBLite consensus disorder prediction 1 24 - -
Vimu6g00788 926 Gene3D Ribonuclease Inhibitor 33 311 IPR032675 -
Vimu6g00788 926 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515
Vimu6g00788 926 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 685 735 IPR000225 GO:0005515
Vimu6g00788 926 SUPERFAMILY ARM repeat 366 752 IPR016024 -
Vimu6g00788 926 SMART arm_5 630 673 IPR000225 GO:0005515
Vimu6g00788 926 SMART arm_5 589 629 IPR000225 GO:0005515
Vimu6g00788 926 SMART arm_5 458 498 IPR000225 GO:0005515
Vimu6g00788 926 SMART arm_5 417 457 IPR000225 GO:0005515
Vimu6g00788 926 SMART arm_5 499 542 IPR000225 GO:0005515
Vimu6g00788 926 SMART arm_5 723 764 IPR000225 GO:0005515
Vimu6g00788 926 SMART arm_5 674 722 IPR000225 GO:0005515
Vimu6g00788 926 SMART arm_5 543 584 IPR000225 GO:0005515
Vimu6g00788 926 Pfam Armadillo/beta-catenin-like repeat 422 456 IPR000225 GO:0005515
Vimu6g00788 926 Pfam Armadillo/beta-catenin-like repeat 592 628 IPR000225 GO:0005515
Vimu6g00788 926 Pfam Armadillo/beta-catenin-like repeat 630 672 IPR000225 GO:0005515
Vimu6g00788 926 Pfam Armadillo/beta-catenin-like repeat 553 584 IPR000225 GO:0005515
Vimu6g00788 926 Pfam Armadillo/beta-catenin-like repeat 463 497 IPR000225 GO:0005515
Vimu6g00788 926 Pfam Armadillo/beta-catenin-like repeat 500 542 IPR000225 GO:0005515
Vimu6g00788 926 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Vimu6g00788 926 FunFam Protein ARABIDILLO 2 355 502 - -
Vimu6g00788 926 Pfam F-box-like 40 86 IPR001810 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00788 571 766 U-box Gene Family AT2G23140 33.503 2.30e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00788 - - gmx:100819086 1635.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00788 6 8884188 8894691 Vimu6g00788 6 8884188 8894691 ECH