Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00780 ATGTCATCCACCACCACGGATTCCGATTCTGCATTTTTGGAACAAATTCAGCAATATCTCCTTCAAAATGATTCAACCATTGTAACACCATCTCAAGCTTTTCCTTGCCCTAGGCATGACACTTGTTCGGATGCAAGTGTCGATTTTTCGCATCCCACTGAAGCGCGTGAAGTGGACGCGCCACCCAAGTGGAGGCGTTACAGGGGTGTAAGGCGACGGCCCTGGGGAAAATTCGCAGCCGAGATAAGGGACCCAAAGAAAAACGGTGCTAGGGTTTGGCTGGGAACTTACGTGACTGAAGAGGAAGCAGCTTTGGCTTATGACAAAGCTGCCTTCAAGATGCGAGGCCGAAAAGCTAAACTGAATTTTCCTCATCTCATTGACTCGGATGTGTCATCGGAGCCACCATGTTCGGCGGCTTTGAAGCGGAGCTTGCCAGAATCTTCTCCCCCGCCACCACCATCATCATCATCATCATCAATGGATGATAGTTGTTGTAAGTCACAAGGGTCAAAGAGGAGAAAGAACTTACTAAATAACTTAGCCAAGAATAGAAGAAGCCAAGCCAAGGTGGTGGAAATGGCTTTAGAAGCAAATGTTGTTCAACAATGGGTGAATGATTTCAGTGATTGCACTCTGATCTGGTGTTCCTAG 654 0.4725 MSSTTTDSDSAFLEQIQQYLLQNDSTIVTPSQAFPCPRHDTCSDASVDFSHPTEAREVDAPPKWRRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAALAYDKAAFKMRGRKAKLNFPHLIDSDVSSEPPCSAALKRSLPESSPPPPPSSSSSSMDDSCCKSQGSKRRKNLLNNLAKNRRSQAKVVEMALEANVVQQWVNDFSDCTLIWCS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00780 217 FunFam Ethylene-responsive transcription factor 2 65 125 - -
Vimu6g00780 217 CDD AP2 74 126 IPR001471 GO:0003700|GO:0006355
Vimu6g00780 217 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
Vimu6g00780 217 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
Vimu6g00780 217 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Vimu6g00780 217 MobiDBLite consensus disorder prediction 131 171 - -
Vimu6g00780 217 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Vimu6g00780 217 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Vimu6g00780 217 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Vimu6g00780 217 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Vimu6g00780 217 PANTHER DNA-BINDING DOMAIN 46 182 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00780 Vimu-Chr6 8848938 8849591 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00780 63 129 AP2-EREBP Transcription Factor Family AT2G44840 82.090 4.09e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu6g00780 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00780 K09286 - gmx:102663872 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00780 6 8848938 8849591 Vimu6g00780 6 8848938 8849591 ECH
Vimu9g01699 9 26129168 26133530 Vimu6g00780 6 8848938 8849591 PCT