Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00777 ATGACTTCAGCCACCACAGATTCCGACTTTGAGTTCTTGGAATCCGTTCGACAATACCTACTCGGACACGATTCCATCAATCTCATGCCTGCAACCCATCAAGTTGCTTCTCATGATCCACTTTCAAACCCTAAACGTGATGGTGATTTGGAGAACATTGTTTTCCGCAGTGAGGATGCAACTGCTGTGGTGGCGTGGAAGCATTACCGAGGTGTGAGGCGCAGGCCATGGGGGAAGTTTGCGGCGGAGATAAGGGATCCAAAGAAGAACGGAACTAGGGTTTGGCTTGGAACGTTTGACACTGAGGAGAAAGCAGCTCTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGGCAAAAAGCTAAGCTGAATTTTCCTCATCTTATAGATTCTGATAATTTTGAAACATTGTCAGAACCGGTGATGGAAACAACTTTTTGTAAGAGGAAGTTGTCGCAAAAAAGTTTCGAACCATCTTCACCGTCATCATCGTGTTCAGAAGATAGCTCAGAGTCACAAGGGATAAAGAGGAGGAAGAACCTCATTCATCTATTGAATAATTTAGCCAAGAACAGAAGCCAAGCCAAGCTGGCATGTTGA 600 0.4533 MTSATTDSDFEFLESVRQYLLGHDSINLMPATHQVASHDPLSNPKRDGDLENIVFRSEDATAVVAWKHYRGVRRRPWGKFAAEIRDPKKNGTRVWLGTFDTEEKAALAYDKAAFKMRGQKAKLNFPHLIDSDNFETLSEPVMETTFCKRKLSQKSFEPSSPSSSCSEDSSESQGIKRRKNLIHLLNNLAKNRSQAKLAC 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00777 199 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Vimu6g00777 199 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Vimu6g00777 199 MobiDBLite consensus disorder prediction 154 173 - -
Vimu6g00777 199 Gene3D AP2/ERF domain 67 127 IPR036955 GO:0003700|GO:0006355
Vimu6g00777 199 PANTHER DNA-BINDING DOMAIN 47 171 IPR044808 GO:0003700|GO:0009873
Vimu6g00777 199 Pfam AP2 domain 68 118 IPR001471 GO:0003700|GO:0006355
Vimu6g00777 199 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
Vimu6g00777 199 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
Vimu6g00777 199 MobiDBLite consensus disorder prediction 154 170 - -
Vimu6g00777 199 CDD AP2 67 128 IPR001471 GO:0003700|GO:0006355
Vimu6g00777 199 FunFam Ethylene-responsive transcription factor 2 67 127 - -
Vimu6g00777 199 SUPERFAMILY DNA-binding domain 68 127 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00777 Vimu-Chr6 8831369 8831968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00777 68 137 AP2-EREBP Transcription Factor Family AT2G44840 75.714 1.39e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu6g00777 AP2 2.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00777 K09286 - gmx:548037 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01700 9 26137308 26137933 Vimu6g00777 6 8831369 8831968 PCT