Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00776 ATGGATACTTATAACAGCATAACTACGAATGGTAGTTCTGAATTTGACATGACATTTTCGGACAGTGTTGAAGATTACACGGTTCATGATGGTTTGAGCGACAACAATGTGTTGGTCTGGAATGAGGATTGGTTCTCAGAGAAAGGTGATAAAGCAGAAGAGGTAGTTCGGAGAGGGACGAGGTACAAAGGAGTGCGGCGTAGGGCACATGGAAAGTTTGCTGCAGAGATAAAAGATCCAAACAAAAGTAATAGGGTTTGGCTTGGGACTTATGACACTGAAGAAGAAGCTGCTTTGGCTTATGACAATGCAGCTTTCAAGATTAGAGGCTCCAAAGCCAAGCTCAATTTTCCACACCTCATTCCACCGTTGGATGAACCAACCACCACCGTCGATCACCCTCCTTCTTCTTCTTCATCATCCACGTCTCATGATCCTTCCAAGAAAAGGAAGGGACTGGCTGGTTTGCTCAATAAATTAGCACATGAAAAAAACAGAATTTGA 504 0.4325 MDTYNSITTNGSSEFDMTFSDSVEDYTVHDGLSDNNVLVWNEDWFSEKGDKAEEVVRRGTRYKGVRRRAHGKFAAEIKDPNKSNRVWLGTYDTEEEAALAYDNAAFKIRGSKAKLNFPHLIPPLDEPTTTVDHPPSSSSSSTSHDPSKKRKGLAGLLNKLAHEKNRI 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00776 167 FunFam Ethylene-responsive transcription factor 2 60 119 - -
Vimu6g00776 167 PRINTS Ethylene responsive element binding protein signature 100 120 IPR001471 GO:0003700|GO:0006355
Vimu6g00776 167 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Vimu6g00776 167 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
Vimu6g00776 167 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
Vimu6g00776 167 PANTHER DNA-BINDING DOMAIN 50 147 IPR044808 GO:0003700|GO:0009873
Vimu6g00776 167 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Vimu6g00776 167 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Vimu6g00776 167 CDD AP2 60 120 IPR001471 GO:0003700|GO:0006355
Vimu6g00776 167 Gene3D AP2/ERF domain 60 119 IPR036955 GO:0003700|GO:0006355
Vimu6g00776 167 MobiDBLite consensus disorder prediction 119 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00776 Vimu-Chr6 8824873 8825376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00776 57 121 AP2-EREBP Transcription Factor Family AT2G44840 71.212 1.42e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu6g00776 AP2 3.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00776 K09286 - pvu:PHAVU_008G046500g 192.586