Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00752 ATGCAATCCATCAAGATTCTAGCCTGCTGGAGGATTCTTTACTGGTTTATTTTGGTATTTGTAACACAACTTGCTTGTTTCTCCCAAATCCTTTATTTGGCTTCTATTGCTATCTCAGTCACTATTGTTGATGAAGCTGTAGCAGATAACAGTGAAGCTAATGCACTGCTAAAGTGGAAACACAGCCTTCACACATCCAGCCAAAATGTCTTGTCAACATGGAATGGTGTAACACCATGTAAATGGGATGGAATTCATTGTAACGATTCCAAGTCCATTTCTACCATAGATCTTGAAAATTATGGTCTCATAGGTACCCTTAACACCCTCAACTTCTCAGCTTTCCGTAACCTACTCATCCTAAATATCTATAACAACTCCTTTTATGGGACCATTCCACCACAAATTGGTAACTTGTCCAGAGTAAATGTTTTGAATCTTTCTGCAAATTATTTCAATGGTTCCATCCCTCAACAAATGTGGACACTAAAGAGTTTACAAGGCCTCGATCTATTCACATGTCAATTAAGTGGAGAGATTCCTAATTCCATAGCAAACTTGTCAAACTTGACATATCTAGATTTAAGCATCAACAGTTTTTCTGGCCATATTCCACCAGAGATTGGGAACTTGCACAAGTTGGAATATCTAGCTATTAGTAAAAATAAACTTGTCGGTTCCATTCCTCAAGAAATTGGAATGTTGACAAACCTTGGGTCAATGGATTTGTCAGAAAATTCTCTCTGTGGTACTATCCCTGAAACAATAGGTAACATGAGCAATTTAAGTCAACTTTACATTTCTAACAACTCCCACCTACATGGGCCAATCCCATCTTCCATATGGAACATGTCCAAGTTAACAGTGCTCAACCTTTATGGCAATAGCCATTCTGGATCAATCCCTGCTTCCATAGAAAATTTGTCCAATTTAGATCAACTTGGACTTGATCACAACCAACTTTCCGGTCCCATTCCTTCCACAATTGGAAATTTGACTAAGCTTACCTATTTGTTTTTAAGCTTCAACAATTTTTCTGGATCAATTCCTCCCTCTATAGGAAATTTGATCAATTTGGAAAAGCTTAGTCTCGAAAGAAACAATCTCTCAGGAACAATTCCTGCCACAATTCAAAATTTGAAAAGGCTCACCAGGTTAGCATTGTCCGTCAACAAACTTAATGGCAGTATTTCACAAGTCTTGAATAACAATAATAAATGGTATATTGTGTTACTTGCTGAGAATGATTTCACAGGCCATTTACCAACTCAAATTTGCTCTGCTGGGTCCCTAAGTTTCCTTGTTGCTCACCACAACCGTTTCACCGGTCCAGTACCAGTAAGCTTGAAGAACTGTGCTAGTGTTACTAGACTCAGGTTGGATGGGAACCAATTGGAAGGAGATATATCACAAGATTTTGGTGTATATCCAAATTTGAAACACATTGATTTGAGCGACAACAAGTTTTACGGCCAAATTTCACCAAACTGGGGGAAGTGTCCTAATCTTGATACCCTAAAGATATCCAACAATAACATTTCTGGTGGTATACCAATCGAACTTGTTGAGGCAACCAATCTTGGCAAGCTTCACCTTTCTTTTAACCATTTGAAGGGAAAGATTCCAAAGGAATTAGGGAATATGAAATCGTTAATTGAACTCAAGATTAGCAACAACCATCTTTCTGGAGACATTCCCAAAGAAATTGGATCACTGCAAATTCTTGAAGAATTGGATCTTGGAGATAACCAGTTGAGTGGAAAAATACCAGCAGAAGTTGTAGAGTTGCCTAAGTTGCGAAAGTTGACCTTGAGCAATAATAAAATAAACGGAAATATTCCCTTGGAGTTTCGCCAACTTCAGCCTCTTGAATACCTTGATCTTAGTGGGAATTTCTTGACTGGAACAATACCAAGGCAACTTGGAGCGGTGATCAAATTGAACTGTTTGAATCTCTCTCGCAACAATCTTTCTGGAAGTATTCCATCCAGTTTTGAGGGCATGTCAAATTTGATTTCTGTCAACATATCATACAATCGGTTAGAAGGGCCACTTCCCAAAAATGGAGCCTTTCTTAATGCTTCAATTGAATCATTGAAAAATAACACAGGTTTGTGTGGGAACGTCACTGGGTTGATGCTTTGCCCAGCCAACGGCAATGAAAGGAAGCACAAGGACATTCTTCTGATATTACTTCTCATGTTGGGTGCTCTTGCATTAATATTGTGTGGGGTGGGTGTTTCAATGTATATTCTTTGTCGAAAAGCAAGGAAGAAAGAAGCCCAAGCTAAAGGAAAAGAAGTATCAGAAAATGCATTGTCTCAAGAAGTGTTTTCTGTTTGGAGTCGTGATGGAAAAGTTATGTTTGAAACTATCATTGAAGCTACCCACAATTTTAATGACGAATATCTCATAGGTGTTGGAGGACAGGGAAATGTTTACAGGGCTGAGTTCCCTTCAGGTGAGGTCTATGCAGTGAAGAAACTTCATCTAGGAACAGATGGAGAGAAGCCTAATTTTAAAGCTTTTGAGAATGAAATTCAAGCTTTGACCGAAATCAGGCACCGTAATATTGTAAAGCTCTGCGGGTTTTGCTCACATCCACGATTCACTTTTTTGGTTTATAAGTTCATGGAAGGGGGTAGCTTGGATCAAACCCTAAGCAATGAGAATCAAGCATCTGCATTTAATTGGGAAAAGAGGGTGAATGTTGTGAAAGGTGTGGCCAATGCTTTATCCTACATGCATCATGATTGCTCACCTCCAATAATCCATCGTGACATATCGAGCAAGAATGTTCTTCTTGATTCACAGTACGAAGCTCGTGTCACTGATTTTGGAACAGCTAAGATTCTAAAGCCTGGTTGCTCTTGGACGACGTTTCAAGGCACATTAGGGTATGCAGCTCCAGAGTTTGCCCAAACTATGGAAGTGACTGAGAAATGTGATGTATTCAGTTTTGGTGTGCTTTGCCTAGAAATCATCATGGGGAAACATCCGGGGGATCTCGTTTGTTCGTTGTTATCTTCATCTTCAGCAGCAATAACTCATAATTTTCTACTATTGGATGTGCTAGACCAAAGGCCTCCTCATCCTCTTAAATCAGTTGTCGGGGATGTCATTTTGGTTTCAAGCTTGGCATTTTCTTGCTTGAGTGAAAATCCAAGTTCTCGCCCAACAATGGCTGAAGTGTCCAAAATGTTAATGGTGGGGAAATCATCATTACCAGCTCAGTTACCCATGATTAGACTTGGACAACTCCTCTAA 3267 0.3936 MQSIKILACWRILYWFILVFVTQLACFSQILYLASIAISVTIVDEAVADNSEANALLKWKHSLHTSSQNVLSTWNGVTPCKWDGIHCNDSKSISTIDLENYGLIGTLNTLNFSAFRNLLILNIYNNSFYGTIPPQIGNLSRVNVLNLSANYFNGSIPQQMWTLKSLQGLDLFTCQLSGEIPNSIANLSNLTYLDLSINSFSGHIPPEIGNLHKLEYLAISKNKLVGSIPQEIGMLTNLGSMDLSENSLCGTIPETIGNMSNLSQLYISNNSHLHGPIPSSIWNMSKLTVLNLYGNSHSGSIPASIENLSNLDQLGLDHNQLSGPIPSTIGNLTKLTYLFLSFNNFSGSIPPSIGNLINLEKLSLERNNLSGTIPATIQNLKRLTRLALSVNKLNGSISQVLNNNNKWYIVLLAENDFTGHLPTQICSAGSLSFLVAHHNRFTGPVPVSLKNCASVTRLRLDGNQLEGDISQDFGVYPNLKHIDLSDNKFYGQISPNWGKCPNLDTLKISNNNISGGIPIELVEATNLGKLHLSFNHLKGKIPKELGNMKSLIELKISNNHLSGDIPKEIGSLQILEELDLGDNQLSGKIPAEVVELPKLRKLTLSNNKINGNIPLEFRQLQPLEYLDLSGNFLTGTIPRQLGAVIKLNCLNLSRNNLSGSIPSSFEGMSNLISVNISYNRLEGPLPKNGAFLNASIESLKNNTGLCGNVTGLMLCPANGNERKHKDILLILLLMLGALALILCGVGVSMYILCRKARKKEAQAKGKEVSENALSQEVFSVWSRDGKVMFETIIEATHNFNDEYLIGVGGQGNVYRAEFPSGEVYAVKKLHLGTDGEKPNFKAFENEIQALTEIRHRNIVKLCGFCSHPRFTFLVYKFMEGGSLDQTLSNENQASAFNWEKRVNVVKGVANALSYMHHDCSPPIIHRDISSKNVLLDSQYEARVTDFGTAKILKPGCSWTTFQGTLGYAAPEFAQTMEVTEKCDVFSFGVLCLEIIMGKHPGDLVCSLLSSSSAAITHNFLLLDVLDQRPPHPLKSVVGDVILVSSLAFSCLSENPSSRPTMAEVSKMLMVGKSSLPAQLPMIRLGQLL 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00752 1088 ProSitePatterns Tyrosine protein kinases specific active-site signature. 923 935 IPR008266 GO:0004672|GO:0006468
Vimu6g00752 1088 Pfam Protein kinase domain 801 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00752 1088 SUPERFAMILY Protein kinase-like (PK-like) 786 1069 IPR011009 -
Vimu6g00752 1088 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 404 719 - -
Vimu6g00752 1088 SUPERFAMILY RNI-like 96 403 - -
Vimu6g00752 1088 Gene3D Ribonuclease Inhibitor 410 716 IPR032675 -
Vimu6g00752 1088 FunFam Leucine-rich repeat receptor protein kinase MSP1 761 877 - -
Vimu6g00752 1088 FunFam MDIS1-interacting receptor like kinase 2 isoform A 301 401 - -
Vimu6g00752 1088 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 377 1069 - -
Vimu6g00752 1088 SUPERFAMILY L domain-like 437 707 - -
Vimu6g00752 1088 Gene3D Ribonuclease Inhibitor 302 409 IPR032675 -
Vimu6g00752 1088 Pfam Leucine Rich Repeat 286 308 IPR001611 GO:0005515
Vimu6g00752 1088 Gene3D Phosphorylase Kinase; domain 1 758 877 - -
Vimu6g00752 1088 Gene3D Transferase(Phosphotransferase) domain 1 878 1076 - -
Vimu6g00752 1088 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 205 300 - -
Vimu6g00752 1088 ProSiteProfiles Protein kinase domain profile. 799 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00752 1088 Gene3D Ribonuclease Inhibitor 48 202 IPR032675 -
Vimu6g00752 1088 Gene3D Ribonuclease Inhibitor 203 301 IPR032675 -
Vimu6g00752 1088 SMART LRR_typ_2 596 619 IPR003591 -
Vimu6g00752 1088 SMART LRR_typ_2 548 572 IPR003591 -
Vimu6g00752 1088 SMART LRR_typ_2 115 139 IPR003591 -
Vimu6g00752 1088 SMART LRR_typ_2 308 331 IPR003591 -
Vimu6g00752 1088 SMART LRR_typ_2 356 379 IPR003591 -
Vimu6g00752 1088 SMART LRR_typ_2 332 355 IPR003591 -
Vimu6g00752 1088 SMART LRR_typ_2 235 259 IPR003591 -
Vimu6g00752 1088 SMART LRR_typ_2 644 667 IPR003591 -
Vimu6g00752 1088 SMART LRR_typ_2 187 211 IPR003591 -
Vimu6g00752 1088 FunFam MDIS1-interacting receptor like kinase 2 878 1074 - -
Vimu6g00752 1088 Pfam Leucine rich repeat N-terminal domain 50 88 IPR013210 -
Vimu6g00752 1088 Pfam Leucine rich repeat 334 393 IPR001611 GO:0005515
Vimu6g00752 1088 Pfam Leucine rich repeat 477 537 IPR001611 GO:0005515
Vimu6g00752 1088 Pfam Leucine rich repeat 550 609 IPR001611 GO:0005515
Vimu6g00752 1088 Pfam Leucine rich repeat 623 681 IPR001611 GO:0005515
Vimu6g00752 1088 FunFam MDIS1-interacting receptor like kinase 2 isoform A 49 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00752 Vimu-Chr6 8555614 8559124 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00752 20 970 Receptor kinase-like Gene Family AT4G08850 42.842 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu6g00752 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00752 - - vra:106759489 1636.7