Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00746 ATGGAATGCACGTTTGAAAGGGAAAAGTCCATGCTGGTTCTGTTTCTTTGTGTCTTTCTAACACTCTTGGGGCCTCAAGCTGCTGCTGAAGACAGTGAAGCAAATGCTTTGTTGAAGTGGAAACACAGCTTTGACAACCACAGCCAAGCTCTGTTATCAACATGGAGAGGTAATAATCCATGCACATGGGAAGGAATTCAGTGTGACAAATCCAAGTCTGTATCCACCATAGATCTCCCTAGTTATGGACTTAAAGGTACACTCCACACTCTTAGCTTCTCCATTTTGCCTAACCTTCTCAGCCTGAATATCTACCAAAACTCCTTTCATGGGACCATTCCTCCACAGATTGGTAACTTAACCAAAGTAAATGTTTTAAATTTTTCTTCAAATTCTTTCCACGGTTCCATCCCTCAAGAAATGTGGACACTGGGGAGTTTACATAGCCTTGATCTTTCCTTCTGTCACCTGAGTGGAGAGCTTCCGAATTCCATGGCAAACTTGTCCAATCTGTCATTTCTAGATTTAAGTGGCAGCAATTTTTCTAGCACCCTTCCTCCTGGGATTGGAAAGTTGCATAAGTTGCAGTATCTGGGTATGGGAGATTGTAACCTTTTTGGTTCCATTCCTCAAGAAATTGGAATGTTGACAAACCTTCAACTTATTGATTTGTCAGGAAACTCTCTTTCGGGTACCATCCCTGAAACAATAGGTAACATGAGAAGTTTAAATCGACTCTACCTTTCTAAAAACTCCCTAATATCTGGGAAAATCCCATCCTCCATGTGGAGCATGTCTAACTTGACTTTGCTCTTCCTTTATGACAATAATCTTTCTGGATCAATCCCAGCTTCCATAGAAAATCTGGTCAATTTAGAGGAACTTGGACTTGATAAAAATCAAATTTCCGGACCCATTCCTTCCACCATTGGAAACTTGACAAAGATCACCAGGCTGTATTTAGGCTTTAATAATCTTTCTGGATCAATTCCTCCCTCTATAGGTAATTTGATCAGTTTGGGTGCCCTTAGTCTCCAAGCAAACAAACTCTCTGGACCAATTCCTGATACAGTTGGAAATTTGAAAAAGCTCACCATTTTGGAATTCTCAAGTAACAAACTTAATGGCAGCATTCCACTAGGCTTGAATGACATTACCAACTGGAAATCCTTGTTACTAGCTGAGAATGATTTCACGGGCCATTTACCTCCTCAAATTTGCTCTGCTGGTTCACTACGGTTCTTCAATGCTTTTGGCAACCGTTTCACGGGTCCAGTGCCAAGAAGCTTAAAGAATTGCTCTAGTATTGCTAGACTCAGGGTGGAAGGAAACCAATTGGAAGGAGATATAGCACAAGACTTTGGTGTATATCCAAATTTGGAGTATATTGATTTGAGTGACAATAAATTTCATGGTCACATTTCACCAAACTGGGGAAAGTGCCACAATCTTTATACCTTAAAGATATCCAACAATAATATTTCCGGGGATATACCAATAGAACTTGCTGAGGCAAACAAGCTAGGTGTGCTTCACCTTTCTTCTAATCACTTGAGTGGAAAGCTTCCAAAGGAATTAGGGAATTTGAAATCGTTATTTCAACTCAAGATTAGCAATAACCATCTTTCTGGAAACATTCCAACAGAAATTGGATTACTACAAAATCTTGAAGATTTGGATCTGGGAGATAACGAGTTGAGTGGCCCAATACCAATAGAAGTTGTGAAGTTGCACAAGTTACGGAATTTGAATTTGAGCAAAAACAATATTGGTGGAAGCATTCCCTCTCAGTTTAGCCAATATTTAGTATCTCTTGATCTTAGTGCCAATTTGTTGATTGGAACAATACCAACAAATATTGGAGAGTTGCAAAGGTTGTTCATGTTGAATCTCTCACACAATAGTCTTTCTGGTACCATTCCTTCCACTTTTAGCAGAGCATTGAGTATCGTCAACATATCGGACAATCAATTAGAAGGGCCAATTCCGAATATTCCACCTTTTCTTGATGCTCCAATTGAATCATTGAAAAACAATAAAGGCTTATGTGGTAATGTCAGCGTATTGGATCTTTGTCCAACCAAACATAGTCAAAAGAGCAACAAAGTGATCCTAGTGACATCCCTTAGTTTAGGAGCCCTAGTACTTGTTCTATGTGGGGTGGCACTTTCAATGTACATTTTTTGTCGTGGTAAAAGAAAGGGAAAAAGTCATTCTAATTCTGAAGAAGCGCCAAGGAAGGCACTCTTTTCCGTATGGAGCTACGATGGAAAAATCATGTTTGAAAATATCATTGAAGCTACAGAGAATTTTGATGACAAATATCTCATTGGAGCAGGAAGTCAAGGATATGTTTACAAGGTGGTGTTACCTTCGGGTTTGGTTGTTGCTGTGAAGAAACTTCATTCAGCGATAGACGAGGAAATGTCAGAACTCAGTTCAAAGGCTTTTGCAAGTGAGATTAAAGCATTGACAGAAATCAAACATCGGAACATTATAAAGTTGCATGGATTTTGCTCACATTCACAGGTCTCATTCTTGGTCTATGAGTTCATGGAAGGGGGTAGCTTGGATCAGTTGCTGAACAAAAATACAGAAGCAACTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGCTTGGCCAATGCTTTATCTTATTTGCATCATGATTGCTCACCTCCAATTGTTCATCGGGACATATCAAGTAAAAATGTTCTTTTGGATCTTGAGTACGAAGCTCATGTTTCTGACTTCGGGACTGCTAAGTTTTTGAAGCCTAGTTCAGGAAGTTGGACTGGATTCGCAGGAACCTTTGGGTATGGTGCTCCAGAGTTGGCCCAGACAATGGAAGTTAATGAGAAATGTGATGTTTACAGCTTTGGAGTACTTGCTTTGGAAATCATTATGGGAAAACATCCAAGAGATCTCCTTTCTCAGTTTGTGTCACCATCTATGACACAAATTTTTAAGGATTTGCTATTGGTTGATGTTTTAGATCAACGGCCTCCTCAACCTACAAATCCAATTGATGGGGAGCTGATCTTAATCGTAAGGTTAGCACTTGCTTGCTTGAGTCAAAATCCACGTTCTCGCCCAACCATGGAACAAGTATCCAAGGCATTTGGAACACGAAAATCACCTTCGGTTGACCTATTTCCTAGGATCACTTTGGGACAACTCTGCTGA 3192 0.3988 MECTFEREKSMLVLFLCVFLTLLGPQAAAEDSEANALLKWKHSFDNHSQALLSTWRGNNPCTWEGIQCDKSKSVSTIDLPSYGLKGTLHTLSFSILPNLLSLNIYQNSFHGTIPPQIGNLTKVNVLNFSSNSFHGSIPQEMWTLGSLHSLDLSFCHLSGELPNSMANLSNLSFLDLSGSNFSSTLPPGIGKLHKLQYLGMGDCNLFGSIPQEIGMLTNLQLIDLSGNSLSGTIPETIGNMRSLNRLYLSKNSLISGKIPSSMWSMSNLTLLFLYDNNLSGSIPASIENLVNLEELGLDKNQISGPIPSTIGNLTKITRLYLGFNNLSGSIPPSIGNLISLGALSLQANKLSGPIPDTVGNLKKLTILEFSSNKLNGSIPLGLNDITNWKSLLLAENDFTGHLPPQICSAGSLRFFNAFGNRFTGPVPRSLKNCSSIARLRVEGNQLEGDIAQDFGVYPNLEYIDLSDNKFHGHISPNWGKCHNLYTLKISNNNISGDIPIELAEANKLGVLHLSSNHLSGKLPKELGNLKSLFQLKISNNHLSGNIPTEIGLLQNLEDLDLGDNELSGPIPIEVVKLHKLRNLNLSKNNIGGSIPSQFSQYLVSLDLSANLLIGTIPTNIGELQRLFMLNLSHNSLSGTIPSTFSRALSIVNISDNQLEGPIPNIPPFLDAPIESLKNNKGLCGNVSVLDLCPTKHSQKSNKVILVTSLSLGALVLVLCGVALSMYIFCRGKRKGKSHSNSEEAPRKALFSVWSYDGKIMFENIIEATENFDDKYLIGAGSQGYVYKVVLPSGLVVAVKKLHSAIDEEMSELSSKAFASEIKALTEIKHRNIIKLHGFCSHSQVSFLVYEFMEGGSLDQLLNKNTEATAFDWEKRVNVVKGLANALSYLHHDCSPPIVHRDISSKNVLLDLEYEAHVSDFGTAKFLKPSSGSWTGFAGTFGYGAPELAQTMEVNEKCDVYSFGVLALEIIMGKHPRDLLSQFVSPSMTQIFKDLLLVDVLDQRPPQPTNPIDGELILIVRLALACLSQNPRSRPTMEQVSKAFGTRKSPSVDLFPRITLGQLC 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00746 1063 SMART LRR_sd22_2 265 291 - -
Vimu6g00746 1063 SMART LRR_sd22_2 361 384 - -
Vimu6g00746 1063 SMART LRR_sd22_2 216 242 - -
Vimu6g00746 1063 SMART LRR_sd22_2 313 339 - -
Vimu6g00746 1063 SMART LRR_sd22_2 553 585 - -
Vimu6g00746 1063 ProSitePatterns Tyrosine protein kinases specific active-site signature. 897 909 IPR008266 GO:0004672|GO:0006468
Vimu6g00746 1063 Pfam Protein kinase domain 773 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00746 1063 ProSiteProfiles Protein kinase domain profile. 771 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00746 1063 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 408 696 - -
Vimu6g00746 1063 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 316 1043 - -
Vimu6g00746 1063 SUPERFAMILY RNI-like 77 384 - -
Vimu6g00746 1063 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vimu6g00746 1063 Gene3D Ribonuclease Inhibitor 278 382 IPR032675 -
Vimu6g00746 1063 SUPERFAMILY Protein kinase-like (PK-like) 757 1041 IPR011009 -
Vimu6g00746 1063 Gene3D Phosphorylase Kinase; domain 1 732 851 - -
Vimu6g00746 1063 SMART LRR_typ_2 144 167 IPR003591 -
Vimu6g00746 1063 SMART LRR_typ_2 216 240 IPR003591 -
Vimu6g00746 1063 SMART LRR_typ_2 623 647 IPR003591 -
Vimu6g00746 1063 SMART LRR_typ_2 577 600 IPR003591 -
Vimu6g00746 1063 SMART LRR_typ_2 96 120 IPR003591 -
Vimu6g00746 1063 SMART LRR_typ_2 265 289 IPR003591 -
Vimu6g00746 1063 SMART LRR_typ_2 168 192 IPR003591 -
Vimu6g00746 1063 SMART LRR_typ_2 529 553 IPR003591 -
Vimu6g00746 1063 SMART LRR_typ_2 313 337 IPR003591 -
Vimu6g00746 1063 SMART LRR_typ_2 361 385 IPR003591 -
Vimu6g00746 1063 FunFam MDIS1-interacting receptor like kinase 2 isoform A 30 181 - -
Vimu6g00746 1063 Gene3D Ribonuclease Inhibitor 383 694 IPR032675 -
Vimu6g00746 1063 Gene3D Ribonuclease Inhibitor 185 277 IPR032675 -
Vimu6g00746 1063 Pfam Leucine rich repeat 202 253 IPR001611 GO:0005515
Vimu6g00746 1063 Gene3D Ribonuclease Inhibitor 29 184 IPR032675 -
Vimu6g00746 1063 Pfam Leucine Rich Repeat 146 168 IPR001611 GO:0005515
Vimu6g00746 1063 SUPERFAMILY RNI-like 343 661 - -
Vimu6g00746 1063 FunFam MDIS1-interacting receptor like kinase 2 852 1049 - -
Vimu6g00746 1063 Gene3D Transferase(Phosphotransferase) domain 1 852 1051 - -
Vimu6g00746 1063 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 182 407 - -
Vimu6g00746 1063 FunFam Leucine-rich repeat receptor protein kinase MSP1 733 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00746 Vimu-Chr6 8482670 8486114 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00746 1 945 Receptor kinase-like Gene Family AT4G08850 43.198 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu6g00746 Pkinase 3.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00746 - - gmx:100815688 1419.83