Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00741 ATGGAAGGTAATCTAGAACCAGACGTGAATGTAATAAATGAGCACGAGAGTAAAGATCTAGAGTTACCCATGTTTGAGTTGTCTACCATTACTTCTGCAACCAACAACTTTTCACCTGACAACAAACTAGGAGAAGGTGGCTTTGGATCAGTTTATAAGGGCATCCTGGCCGATGGAGGAGAAATAGCTGTGAAAAGGCTCTCTATGAATTCCAAACAAGGACTTCCAGAGTTCAAAAATGAAGTTATGCATATTGCAAAGCTTCAGCACAGGAATTTAGTGAGGCTACTAGGGTACTGCCTTCAAGGAGGAGAAAGATTGCTTGTTTATGAATTTATGCCCAACAAAAGCTTGGATTCCTTCATATTTGATGAAAACAAGAGCATGTTACTAGATTGGCCAAGGCGCATGCTGATTATCAACGGGGTTGCACGGGGTCTTCTTTATCTTCATCAAGATTCAAGGCATAGAATAGTTCATAGAGACCTCAAAGCGGGGAATGTTTTGTTAGATAGTGAAATGAACCCAAAAATCTCGGACTTTGGACTGGCTAGAAGCTTTGGAGGAAATGAAATCGAAGCAACCACAAAACATGTAGTTGGAACCTAG 609 0.4089 MEGNLEPDVNVINEHESKDLELPMFELSTITSATNNFSPDNKLGEGGFGSVYKGILADGGEIAVKRLSMNSKQGLPEFKNEVMHIAKLQHRNLVRLLGYCLQGGERLLVYEFMPNKSLDSFIFDENKSMLLDWPRRMLIINGVARGLLYLHQDSRHRIVHRDLKAGNVLLDSEMNPKISDFGLARSFGGNEIEATTKHVVGT 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00741 202 ProSiteProfiles Protein kinase domain profile. 37 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00741 202 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
Vimu6g00741 202 SMART serkin_6 37 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00741 202 Gene3D Phosphorylase Kinase; domain 1 11 112 - -
Vimu6g00741 202 ProSitePatterns Protein kinases ATP-binding region signature. 43 65 IPR017441 GO:0005524
Vimu6g00741 202 Gene3D Transferase(Phosphotransferase) domain 1 113 202 - -
Vimu6g00741 202 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 4 112 - -
Vimu6g00741 202 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 19 202 - -
Vimu6g00741 202 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 113 202 - -
Vimu6g00741 202 SUPERFAMILY Protein kinase-like (PK-like) 21 202 IPR011009 -
Vimu6g00741 202 Pfam Protein tyrosine and serine/threonine kinase 40 187 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00741 Vimu-Chr6 8417332 8421133 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00741 30 202 Receptor kinase-like Gene Family AT4G23230 64.162 1.92e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu6g00741 PK_Tyr_Ser-Thr 1.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00741 - - vun:114184694 402.134