Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00740 ATGACTTTTGGTGCATGTGATTGTAGTGGCTATCTTCCTCCAGAGTACATAATTGATGGAGCTTATTCAACAAAGTCAGATGTTTTCAGCTATGGTGTACTGATATTGGAGATAGTGAGTGGGAAGAGAAATAAAGGATTCTGTCATCAAGATAATCTGCTGGCACATGTGTGGAGGCTGTTTACTGAAGGCAAATGTTCTGAAGTAGTTGATGCAGCAATAACAGAGTCAGTCCATTTGTCCGAAGCTCTAAGAACAATTCATGTGGGACTACTGTGTGTGCAACTAAATCCTGAAGATAGGCCAAGCATGTCATCTGTGGTTATGATGCTTAGCAGTGAATCTACACTGCCTCAGCCAAACTTGCCTGGATTCTTTACAAGTACAAGTATGGCTGGTGATAGTTCATCATCAAGCAGTCATAAACAATACACAAATAATGACTTGACACTTAGCATAATGTCTGCTAGATAG 474 0.403 MTFGACDCSGYLPPEYIIDGAYSTKSDVFSYGVLILEIVSGKRNKGFCHQDNLLAHVWRLFTEGKCSEVVDAAITESVHLSEALRTIHVGLLCVQLNPEDRPSMSSVVMMLSSESTLPQPNLPGFFTSTSMAGDSSSSSSHKQYTNNDLTLSIMSAR 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00740 157 Gene3D Transferase(Phosphotransferase) domain 1 1 120 - -
Vimu6g00740 157 SUPERFAMILY Protein kinase-like (PK-like) 6 136 IPR011009 -
Vimu6g00740 157 Pfam Domain of unknown function (DUF3403) 112 157 IPR021820 GO:0004674
Vimu6g00740 157 ProSiteProfiles Protein kinase domain profile. 1 122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00740 157 Pfam Protein tyrosine and serine/threonine kinase 11 110 IPR001245 GO:0004672|GO:0006468
Vimu6g00740 157 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00740 Vimu-Chr6 8416340 8417275 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00740 10 126 Receptor kinase-like Gene Family AT4G23290 56.557 4.58e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu6g00740 PK_Tyr_Ser-Thr 2.2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00740 - - vun:114184694 262.692