Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00739 ATGAGCAAGTTGGGTGTGGGTTTGGACTTTCACAACTTCAAGTATATGATCGAGCCCAAATTGGAGGACCCTATCTGCGTCAACGGTGGACATTGGACTATGTCTTTGCAAAGGAGAAAATCTGATACCGGTTGGCTGTATTCGATTAGGTCATTAGAGGCACTACACAAACTTTTTGAGCAGTTTCTTGGAGATTTTATGAGTGCACTTCATGTTCTTCTATCCAAAAGCAAGTTGGTTGTGGGTGCGGACTTTCACAACTTCAAGTATATGATCGAGGCCAATTGGAGGACCCTATCTGCGTTAACGGTGGACAATGGACTACGACTTTGCAAAGGAGAAAATCTGATACCGATTAGGTCATTAGAGGCACTACACAAACTTTTTGAGCAGTTTCTTGGAGATTTTATGAGAGCACTTCATGTTCTTCTATCCAAAAGCAAGTTGGTTGTGGGTGCGGACTTTCACAACTTCAAGTATATGATCGAGCCCAAATTTGAGGACCCTATCTGTGTCAGCAGTGGACAATGGAGTACGACTTTGCAAAGGAGAAAATCTGATACCGGTTGGTTGTATTCGATTAGGTCATTAGAGGCACTACACAAACTTTTTGAGCAGTTTTTTGGAGATTTTATGAGTGCACTTCATGTTCTTCTATCCAAAAGCAAGTTGGTTGTGGTTGCGGACTTTCACAACTTCAAGTATATGATTGAGCCCAAATTGGAGGACCCTATCTGCGTCAACGGTGGACAACGGACAACGACTTTGCAAAGGAGAAAATCTGATACCAGTTGGTTGTATTCGATAAGGTCATTGGAGGCACTACCCAAACTTTTTGAGCAGTTTCTTGGAGATTTTATGAGCGCACTTCATGTTCTTCTATCCAAAAGGACCCTATCTGCGTCAACGGTGGACAATGGACTACGACTTTGCAAAGGAGAAAATCTAATTCCGCATGTTGGTTGTGGTTGCGGACTATCACAACTTCAAGTATATGATCGATCCCAAATTGGAGGACCTTATCTGCGTCAACGGTGGACAATGCACTACGACTTTGCAAAGGAGAAAATCTGA 1074 0.4274 MSKLGVGLDFHNFKYMIEPKLEDPICVNGGHWTMSLQRRKSDTGWLYSIRSLEALHKLFEQFLGDFMSALHVLLSKSKLVVGADFHNFKYMIEANWRTLSALTVDNGLRLCKGENLIPIRSLEALHKLFEQFLGDFMRALHVLLSKSKLVVGADFHNFKYMIEPKFEDPICVSSGQWSTTLQRRKSDTGWLYSIRSLEALHKLFEQFFGDFMSALHVLLSKSKLVVVADFHNFKYMIEPKLEDPICVNGGQRTTTLQRRKSDTSWLYSIRSLEALPKLFEQFLGDFMSALHVLLSKRTLSASTVDNGLRLCKGENLIPHVGCGCGLSQLQVYDRSQIGGPYLRQRWTMHYDFAKEKI 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00739 357 Pfam Eukaryotic initiation factor 4E 135 192 IPR001040 GO:0003723|GO:0003743|GO:0006413
Vimu6g00739 357 SUPERFAMILY eIF4e-like 210 269 IPR023398 -
Vimu6g00739 357 SUPERFAMILY eIF4e-like 2 49 IPR023398 -
Vimu6g00739 357 Gene3D RNA Cap, Translation Initiation Factor Eif4e 1 62 IPR023398 -
Vimu6g00739 357 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 2 49 IPR001040 GO:0003723|GO:0003743|GO:0006413
Vimu6g00739 357 Gene3D RNA Cap, Translation Initiation Factor Eif4e 121 202 IPR023398 -
Vimu6g00739 357 Gene3D RNA Cap, Translation Initiation Factor Eif4e 203 282 IPR023398 -
Vimu6g00739 357 SUPERFAMILY eIF4e-like 135 194 IPR023398 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00739 Vimu-Chr6 8404345 8409739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00739 2 62 Eukaryotic Initiation Factors Gene Family AT4G18040 54.098 4.59e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00739 K03259 - gmx:100793288 81.6481