Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00738 ATGAGCAAGTTGGTTGTGGGTTCGGACTTTCACTACTTCAAGTATATGATCGAGCCCAAATTGGAGGACCCTATCTGCATCAACGGTGGACAATGGACTACGACTTTGCAAAGGAGAAAATCTGATACCGGTTGGTTGTATTCGATTATGTCATTGGAGGCACTACACAAACTTTTTGAGCAGTTTCTTGGAGATTTTATGAGTGCACTTCGTGTTCTTCTATCCAAAAGCCCTATTCTATCCGATTTAGAAATGAAGATTAGTTACTGTTATATTTTTGTTGCTGTATGTGCTTATCAGATTATGTCATTGGAGGCACTACACAAACTTTTTGAGCAGTTTCTTGGAGATTTTATGAGTGCACTTCATGTTCTTCTATCCAAAAGCAAGTTGGTTGTGGATGCGGACTTTCACAATTTCAAGTATATGATCGAGCCCAAATTGGAGGACCCTATCTGCGTCAACGGTGGACAATGGACTACGACTTTGCAAAGGATAAATTCTGATACCGGTTGGTTGTATTCGATTATGTCATTGGAGGCACTACACAAACTTTTTGAGCAGTTTCTTGGAGATTTTATGAGTGCACTTCATGTTCTTCTATCCAAATGCAAGTTGGTTGTGGATGCGGACTTTCACAATTTCAAGTATATGATCGAGCCCAAATTGGAGGACCCTATCTGCGTCAACGGTGGACAATGGACTACGACTTTGCAAAGGATAAAATCTGATACCGGTTGGTTGTATTCGAGTAGGTCATTGGAGGCACTACATAAACTTTTTGAGCAGTTTCTTGGAGATTTTATGAGCGCACTTCATGTTCTTCTATTCAAAAGGTACTGCTCGTGA 849 0.4052 MSKLVVGSDFHYFKYMIEPKLEDPICINGGQWTTTLQRRKSDTGWLYSIMSLEALHKLFEQFLGDFMSALRVLLSKSPILSDLEMKISYCYIFVAVCAYQIMSLEALHKLFEQFLGDFMSALHVLLSKSKLVVDADFHNFKYMIEPKLEDPICVNGGQWTTTLQRINSDTGWLYSIMSLEALHKLFEQFLGDFMSALHVLLSKCKLVVDADFHNFKYMIEPKLEDPICVNGGQWTTTLQRIKSDTGWLYSSRSLEALHKLFEQFLGDFMSALHVLLFKRYCS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00738 282 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 117 179 IPR001040 GO:0003723|GO:0003743|GO:0006413
Vimu6g00738 282 SUPERFAMILY eIF4e-like 117 178 IPR023398 -
Vimu6g00738 282 Pfam Eukaryotic initiation factor 4E 2 51 IPR001040 GO:0003723|GO:0003743|GO:0006413
Vimu6g00738 282 Pfam Eukaryotic initiation factor 4E 117 178 IPR001040 GO:0003723|GO:0003743|GO:0006413
Vimu6g00738 282 SUPERFAMILY eIF4e-like 192 249 IPR023398 -
Vimu6g00738 282 SUPERFAMILY eIF4e-like 2 51 IPR023398 -
Vimu6g00738 282 Gene3D RNA Cap, Translation Initiation Factor Eif4e 1 68 IPR023398 -
Vimu6g00738 282 Gene3D RNA Cap, Translation Initiation Factor Eif4e 188 258 IPR023398 -
Vimu6g00738 282 Gene3D RNA Cap, Translation Initiation Factor Eif4e 103 187 IPR023398 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00738 Vimu-Chr6 8396809 8402108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00738 2 62 Eukaryotic Initiation Factors Gene Family AT4G18040 54.098 6.20e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00738 K03259 - jre:108987487 83.1889