Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00735 ATGCTTCTCTGTCTTTGTGAAATTTCCTTGGCACTTGACTCCATTTCTCAAGACCTGTCTCTAAGTGATGATGTTGATAACACCACCTTGGTTTCGAAAGATGGAACCTTCGAACTTGGATTCTTCACCCCAGGAAATTCCCAGAAACGTTACCTGGGGATTTGGTACAGGAAAATCCCTATTCAAACTGTGGTTTGGGTTGCAAACAGGTTCGACCCGATCAATGATTCATCTGGCATCTTGAGAATGAACACCAGCAGTGGGAACCTTGTCCTCACACAGGATGACAAAGTTGTTTGGACTACAACCTCTTCCAAAAAAGCAGAAATCCCAGTAGCCCTTCTCTTAGATTCTGGCAATCTTGTGATAAAAGATGAGAAAGATGCAAACATTGAGGCCTACTTGTGGCAGAGCTTTGACTACCCTACTGATACCTTCTTACCAGAAATGAAGTTTGGTTGGGACTTGAGAACTGGAATCAATAGGAAGATAACAGCTTGGAAAAATCTGGCAGATCAGGAAAAGAGTGAGTTACTAGACTGGTCAAAGCGCTTCAACATTATATGTGGAATTACTAAGGGCCTTCTCTACCTTCATCAGGATTCCAGGCTAAGGATTATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTTGATAATGAGTTGAACCCCAAAATTTCAGATTTTGGCATGGCTAGAATATTTGGTGGAGATCAGAAAGAAGGAAACACTGGGAGAATAGTTGGTACTTAG 753 0.4143 MLLCLCEISLALDSISQDLSLSDDVDNTTLVSKDGTFELGFFTPGNSQKRYLGIWYRKIPIQTVVWVANRFDPINDSSGILRMNTSSGNLVLTQDDKVVWTTTSSKKAEIPVALLLDSGNLVIKDEKDANIEAYLWQSFDYPTDTFLPEMKFGWDLRTGINRKITAWKNLADQEKSELLDWSKRFNIICGITKGLLYLHQDSRLRIIHRDLKASNVLLDNELNPKISDFGMARIFGGDQKEGNTGRIVGT 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00735 250 SMART blect_4 21 142 IPR001480 -
Vimu6g00735 250 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 3 174 - -
Vimu6g00735 250 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 161 250 - -
Vimu6g00735 250 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vimu6g00735 250 CDD B_lectin 26 142 IPR001480 -
Vimu6g00735 250 Gene3D Transferase(Phosphotransferase) domain 1 167 250 - -
Vimu6g00735 250 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 170 IPR036426 -
Vimu6g00735 250 ProSiteProfiles Bulb-type lectin domain profile. 16 136 IPR001480 -
Vimu6g00735 250 ProSiteProfiles Protein kinase domain profile. 28 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00735 250 Pfam D-mannose binding lectin 63 168 IPR001480 -
Vimu6g00735 250 Gene3D - 11 139 IPR036426 -
Vimu6g00735 250 Pfam Protein kinase domain 181 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00735 250 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 8 139 - -
Vimu6g00735 250 SUPERFAMILY Protein kinase-like (PK-like) 169 250 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00735 Vimu-Chr6 8382530 8383954 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00735 170 250 Receptor kinase-like Gene Family AT4G05200 69.136 1.46e-32 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu6g00735 B_lectin 3.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00735 - - gmx:100778155 264.618