Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00730 ATGCTCCTCTGTTACTCTCTTCATCTCCCAATACTATCTTCTTATTCACACAAATCAATCAGCGCTCCGAACACCGGCGGTTACATAAAGTTCCAAACCAGGTACCGCGAAAACCTCCGATACCTTCGAACGTTGACCATAATCGACCCCAAAACCAAACCGGAGGATCTCCCTCTCCCCAACGATGTCGACCACATCCTCCGCACTCTCACGTTCCTCAAGTCACGTTCCTTCTCCGACGCCGACATCCCCCGCCTCCACTACCTCACCCCTCAGCTCTTCTCCACCGCCGTCGTCCCCTCCGACGTCGCCGCCGTGTTCTCCTTCCTGGCCGACGAACTTCCGGCCACCTCGTCGGAGTCTCGCTATCTCATTCTCCGATGCCCCAAGCTGCTCTTCTCCCACGTCGACCTCTGTCTTCGACCCACGCTCCAATTTCTCCGCCAGATTGGCATCGAGGGGCTGAACAGGCCCACGACGCGGAACGCGCACTTACTGAACACGCGGGTGGATAAGCTGCATGCGAAGGTTGAGTTCTTGCAGGAATTAGGGTTTGAGTACGAGGATGCAGTGAAAGCATGTGCGAGGGTGCCGGCCATTTTTGGATATGACGTAGGGAACAATCTATGGCCAAAGTATGTGTATCTTGTGAAGGAAATGGAGAGGGATTTGGAGGAGTTGAAGAAGTTTCCTCAGTACTTTGGGTTCAGTTTGAAGGAGAGGATTGTGCCAAGGCACTTGCATTTGAAGGAGAGGGGTGTTAGGATTCCCTTGAACAGAATGTTGATGTGGGGTGATGATAAGTTTTACAAGAACTGGAAGTGA 825 0.5273 MLLCYSLHLPILSSYSHKSISAPNTGGYIKFQTRYRENLRYLRTLTIIDPKTKPEDLPLPNDVDHILRTLTFLKSRSFSDADIPRLHYLTPQLFSTAVVPSDVAAVFSFLADELPATSSESRYLILRCPKLLFSHVDLCLRPTLQFLRQIGIEGLNRPTTRNAHLLNTRVDKLHAKVEFLQELGFEYEDAVKACARVPAIFGYDVGNNLWPKYVYLVKEMERDLEELKKFPQYFGFSLKERIVPRHLHLKERGVRIPLNRMLMWGDDKFYKNWK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00730 274 Pfam mTERF 125 269 IPR003690 GO:0003690|GO:0006355
Vimu6g00730 274 PANTHER CGI-12 PROTEIN-RELATED 62 272 IPR003690 GO:0003690|GO:0006355
Vimu6g00730 274 Gene3D Transcription termination factor 3, mitochondrial 56 274 IPR038538 -
Vimu6g00730 274 FunFam Transcription termination factor MTEF1, chloroplastic 33 274 - -
Vimu6g00730 274 SMART mt_12 191 223 IPR003690 GO:0003690|GO:0006355
Vimu6g00730 274 SMART mt_12 156 186 IPR003690 GO:0003690|GO:0006355
Vimu6g00730 274 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Vimu6g00730 274 SMART mt_12 224 255 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00730 Vimu-Chr6 8338611 8339520 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu6g00730 mTERF 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00730 K15031 - gmx:100812333 488.804