Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00722 ATGCCTCCGAGGGTAGTGAAGAGAGGCGCTGCAGCGAAGAGGGCGTCGAGAGGATCCTCGAAGGCTGCACCTGATAACCAGCGTGAGCCAGAAACTGCTGAAGTGGAGGCGAAAAATCATGCAGAAAATTCAGCTGTTGATGTTGGAATGGAAGAAAAACACTTTGACGTGGACCAAGAGCTTCCGGAAGCCCCAAATGGGTCGGCTAAGGTGGAAAACAATGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAGGGTGAACATTTAGATTTAGAGGATAATTATCCTGAGTATGAAGCAGAGGATTATGGTGGTGTTGACTATGATGAAAAGGAAATTGAACAAGATGAAGGTCAGGATGAGGCAGATGAAGTAGAGGAAGAACCTGAAGAGATTATAGGTGACGAAGAGGGTGATACAGGTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGATGATGATGATGGTGAACATGCTGGTGAGGAGCATGAGCATGCCCAGGTGCCTGACGTGGTGGAAGAGGAACACCGCAAAGTTGTAAAGGAGAGGCGAAAGCGTAAGGAATTTGAAGTATTTGTGGGGGGACTAGATAAGAATGCTACTGAGCATGACCTGAAGAAGGTTTTCAGCAAAGTTGGGGTAGTTACTGAAGTCAGGCTGATGATAAATCCCCAGACTAGAAGAAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTTGAGCAAGCAAAAAGAGCTGTGGTGGAGCTAAAAAATCCTGTGATTAATGGTAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACTTAGGTAACATATGCAAGACTTGGAAAAAGGAAGCTTTGAAGGAGAAACTAAAACATTATGGAGTAGAAAATGTGGAGGATTTGACTTTAGTAGAAGATGATACCAATGAGGGGATGAACCGAGGATTTGCATTTTTAGAGTTTTCATCTCGTTCAGATGCTAAGGAAGCCTACAGGAGATTGCAAAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCTGCGAAGGTTTCCTTTGCTGATTCCTTTATTGATCTGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTATCGATTCACTACCTCCGTCATGGGATGAAGATTATGTCCGGGATCTTCTCAAGAAATATGGAGAGATTGAAAAAATTGAGCTTGCTAGGAACATGCCAGCTGCACGCAGGAAGAACTATGGATTTGTTACATTTAGTACACATGCTGCTGCTGTGGAATGTGCTGATAGCATAACTAGTGCTGGGTTAGGTGAAGGTGACAGAAAGGCAAAAGTTAGGGCTAGATTATCACGGCCTCTTTCAAAACCTCTTCAGAGAGGCCATGGGAAACACAATAACCATGGGACAGACTTTCGTTCTGGTCGCAACTCTGGAAGATTGGCAAGACCTTCACGGGGTCGACCTGCTCCATCTAGTTATCCTACCCGTGTGGTTAGAGGCATTGGAAGTCGTGCTCCACCAGTTAGACCTGTTAGTGTTAGAAGTAGACGTCCTGTCACATCCATGCTAGAAAGAGACAGGCCAGTTGCTCCTCCAGCTAGAACCTTTGAAAGGAGATTGACTGCTCCTGCATATTCAAAAAGTGGCATGAAAAGAGACTATAGTCGACGTGAGGATCTACTGCCTCCAAGAAGCAGAGTTGCTGCAGATTATGGCTCTAGGATAGCATCTCAGAGGCACACATCTTATAGGGATTATCCTGCCCGTGGTTCTGACTACCCTGAGCTACATAGAAGTAGTTCTCGTGCGGCACCAAAGAGGGGTTATGTTGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCTCCTCCCCATCTAAGTTATCGAGAAGGACGACCCCGTGATTATGAAACTATAGCTGGCTCAAAACGTCCTTATACTGCTATAGATGATGTTCCTCCACGGTATGATACTGGTGCTCGCCAATCAAGATCCCGTTTAGATTATGAATATGGAAGTAGTGCTTCACAGTATGGAGATGCTTATCGTGATAGACTTGGAAGATCTAGTCTGGGATATAGTGGCAGCAGAACTTCCATTTCTAGTCAAGAATTACATGGGACGTATGGTAGTCGACAGGGCATAAGTTATGGTGGAGGTTCTTTTGGTGGTAGTGATGGTGGTATGTACACATCAAGTTATGGTGGTGATTACGAATCTCGTGGAAGTGATGTAATGTTGGAGGCCGCTCATATTCATCCATGTACTCTGGTAGAGGTGTGGGTGGTGGTAGCAGCAGCTATATGGGTGGTGGTGGCGGCTCTGGGTCTTATTATTGAGGTA 2343 0.4464 MPPRVVKRGAAAKRASRGSSKAAPDNQREPETAEVEAKNHAENSAVDVGMEEKHFDVDQELPEAPNGSAKVENNEEEVKESIDEYEKGEHLDLEDNYPEYEAEDYGGVDYDEKEIEQDEGQDEADEVEEEPEEIIGDEEGDTGDEEVEYVYEEVEDDDDGEHAGEEHEHAQVPDVVEEEHRKVVKERRKRKEFEVFVGGLDKNATEHDLKKVFSKVGVVTEVRLMINPQTRRNKGFAFLRFETVEQAKRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLVEDDTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVVFGVDKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKNYGFVTFSTHAAAVECADSITSAGLGEGDRKAKVRARLSRPLSKPLQRGHGKHNNHGTDFRSGRNSGRLARPSRGRPAPSSYPTRVVRGIGSRAPPVRPVSVRSRRPVTSMLERDRPVAPPARTFERRLTAPAYSKSGMKRDYSRREDLLPPRSRVAADYGSRIASQRHTSYRDYPARGSDYPELHRSSSRAAPKRGYVDDGYGQRFERPPPPHLSYREGRPRDYETIAGSKRPYTAIDDVPPRYDTGARQSRSRLDYEYGSSASQYGDAYRDRLGRSSLGYSGSRTSISSQELHGTYGSRQGISYGGGSFGGSDGGMYTSSYGGDYESRGSDVMLEAAHIHPCTLVEVWVVVAAAIWVVVAALGLIIEV 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00722 781 SMART rrm1_1 274 353 IPR000504 GO:0003723
Vimu6g00722 781 SMART rrm1_1 371 446 IPR000504 GO:0003723
Vimu6g00722 781 SMART rrm1_1 194 267 IPR000504 GO:0003723
Vimu6g00722 781 CDD RRM_SF 372 427 - -
Vimu6g00722 781 CDD RRM_SF 195 266 - -
Vimu6g00722 781 MobiDBLite consensus disorder prediction 574 632 - -
Vimu6g00722 781 MobiDBLite consensus disorder prediction 450 516 - -
Vimu6g00722 781 MobiDBLite consensus disorder prediction 646 665 - -
Vimu6g00722 781 FunFam Heterogeneous nuclear ribonucleoprotein Q 274 356 - -
Vimu6g00722 781 MobiDBLite consensus disorder prediction 96 144 - -
Vimu6g00722 781 FunFam RNA recognition water-stress protein1 360 486 - -
Vimu6g00722 781 MobiDBLite consensus disorder prediction 27 60 - -
Vimu6g00722 781 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 263 IPR000504 GO:0003723
Vimu6g00722 781 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 275 341 IPR000504 GO:0003723
Vimu6g00722 781 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 429 IPR000504 GO:0003723
Vimu6g00722 781 MobiDBLite consensus disorder prediction 590 605 - -
Vimu6g00722 781 Gene3D - 156 273 IPR012677 -
Vimu6g00722 781 SUPERFAMILY RNA-binding domain, RBD 194 429 IPR035979 GO:0003676
Vimu6g00722 781 Coils Coil 68 88 - -
Vimu6g00722 781 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 16 706 - -
Vimu6g00722 781 Gene3D - 274 356 IPR012677 -
Vimu6g00722 781 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 357 IPR000504 GO:0003723
Vimu6g00722 781 Gene3D - 360 487 IPR012677 -
Vimu6g00722 781 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 271 IPR000504 GO:0003723
Vimu6g00722 781 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 126 273 - -
Vimu6g00722 781 MobiDBLite consensus disorder prediction 1 144 - -
Vimu6g00722 781 Coils Coil 110 130 - -
Vimu6g00722 781 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 370 450 IPR000504 GO:0003723
Vimu6g00722 781 MobiDBLite consensus disorder prediction 70 95 - -
Vimu6g00722 781 SUPERFAMILY RNA-binding domain, RBD 270 357 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00722 Vimu-Chr6 8283847 8288240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00722 188 456 Eukaryotic Initiation Factors Gene Family AT1G49760 24.183 2.88e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00722 - - gmx:100811387 1127.46