Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00718 ATGGCTTCCCCATCTTCCCCCACTGATTCCAACCCCCCCTCCGCCCTCCCCCTCACTCTCGCCGCCCCTCCCTCCACCTCCTCCCGCCGTCTCCCCCCGCCATGCTGGACCCCGGAGGAAACCTCCGCCCTCATCGACGCCTACCGCGACAAGTGGTACTCCCTCGGCCGCACCAACCTCAAAGCCACCCACTGGCAAGAGGTCGCCGATGCCGTCACTGCCCAGTGCCCCAACGCTTCCCCCACTGCCAAAACCGCCGTCCAGTGTCGCCACAAAATGGAAAAACTCCGTAAACGCTACCGCACCGAAATCCAACGCCTCCGCTCCCTCCCTCTCCCTCGCCTCATCAACAACTCCTCCACCGCTTCACCCTCCTCCTGGGTTCACTTCAAATCCATGGATTCCATGGAAAAAGGCCCCAACAAACCCCACACCGACACAACCACCGCCACCAACCCTAATACCCCCACCAACAACCTCAATTTCCCAGACGACAACGACGACGACGATCTGTACGAGGAATTCAAGAACGCCCCCGGATCCAACACGCGCAGCCTCAATAAACTCTACAAGAACGGTTTCGGATCCGGATCCGCCTCCGGGTTCCGGATCCGGATCCCGGCAGGGGTGCCAAACCACACCTCTTCGAAATTCTTCAACGCGCCTCCTCCCGGCATGGCGCCGCGCAACGGCGCGAAGAGGGAGCGTGAGAGCGACGCGGTGGCCGAGATGGTGGGCGCCATAAAGGTGTTGCGCGATGGGTTCGTGAGGATGGAGCAGATGAAGATGGAGATGGCGAGGGAGATTGAGAGCATGCGAATGGAGATGGAGATGAAGCGCACGGAGATGATCCTGGACTCTCAGCAGCGGATCGTTGAGGCTTTCGCCAGGGCCGTTTCACAAAAGAGGAGCAAGGGCAAGTCCACGCCTTCTCCCTCGTCGCAACCCTGA 951 0.6088 MASPSSPTDSNPPSALPLTLAAPPSTSSRRLPPPCWTPEETSALIDAYRDKWYSLGRTNLKATHWQEVADAVTAQCPNASPTAKTAVQCRHKMEKLRKRYRTEIQRLRSLPLPRLINNSSTASPSSWVHFKSMDSMEKGPNKPHTDTTTATNPNTPTNNLNFPDDNDDDDLYEEFKNAPGSNTRSLNKLYKNGFGSGSASGFRIRIPAGVPNHTSSKFFNAPPPGMAPRNGAKRERESDAVAEMVGAIKVLRDGFVRMEQMKMEMAREIESMRMEMEMKRTEMILDSQQRIVEAFARAVSQKRSKGKSTPSPSSQP 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00718 316 Coils Coil 262 282 - -
Vimu6g00718 316 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 9 301 IPR044823 -
Vimu6g00718 316 MobiDBLite consensus disorder prediction 132 162 - -
Vimu6g00718 316 Pfam Myb/SANT-like DNA-binding domain 34 136 IPR044822 -
Vimu6g00718 316 MobiDBLite consensus disorder prediction 214 235 - -
Vimu6g00718 316 Gene3D - 36 102 - -
Vimu6g00718 316 MobiDBLite consensus disorder prediction 1 26 - -
Vimu6g00718 316 MobiDBLite consensus disorder prediction 142 162 - -
Vimu6g00718 316 FunFam Trihelix transcription factor ASIL2 36 102 - -
Vimu6g00718 316 Coils Coil 90 110 - -
Vimu6g00718 316 SMART 118neu2 43 141 IPR006578 -
Vimu6g00718 316 ProSiteProfiles Myb-like domain profile. 36 97 IPR001005 -
Vimu6g00718 316 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00718 Vimu-Chr6 8268161 8269111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00718 35 153 Trihelix Transcription Factor Family AT3G14180 29.412 1.72e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu6g00718 Myb_DNA-bind_4 7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00718 - - gmx:102665993 451.055