Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00708 ATGGCTGCATGTTGCCCACTTTATTTGTCTCTCTCTTTCCCTTCCAACCTCATCCCTTTAATCCATTTTCTCTGCAGTACTGAATTGATATCCCTTTGTTTTTCTATTCGTTTTCAGAGCTTTGTGTGTATGGCCGGCATAGACTTGGGTTCAGCATCGCATTTTCTTCATCATCATCGCCTTCAACGCCCTGACCTTGAAGACGATGAAAACCAACACGACCAAGACAACAACAACAACGTTAACAATCACGAAGGACTTGAGCTAGTTACCACAAATCAAGGTCCCGGTGATATTGTCGCTCGCAGGCCAAGAGGCAGACCTCCTGGTTCAAAGAACAAGCCTAAGCCACCTGTTATCATCACAAGAGAGAGTGCAAACACGCTTAGGGCTCACATCCTTGAAGTCAGCAGTGGCTGTGATGTCTTTGACTCCGTCGCTACCTACGCAAGGAAGCGCCAAAGAGGGATCTGTGTCCTCAGTGGGAGTGGCACCGTCACCAATGTCACGCTCCGCCAGCCGGCCGCAGCCGGCGCCGTTGTCACGCTTCACGGAAGGTTTGAGATCCTGTCTTTGTCGGGATCATTCCTTCCACCTCCTGCTCCACCCGGTGCCACCAGTTTAACTGTGTTTCTTGGTGGAGGACAGGGCCAGGTTGTGGGCGGAAACGTTGTCGGTCCCTTGGTGGCTTCTGGGCCTGTTATTGTTATTGCTTCATCTTTTACTAATGTAGCATACGAGAGGTTGCCTTTGGATGAAGAAGAATCTATGCAGATGCAACAGGGACAATCATCTGCTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTGGTAGCGGCGGTGGAGTCAGTAATAACTCTTTTCCTGACCCTTCTTCAGGGCTTCCATTCTTCAATTTGCCCTTAAACATGCCTCAGTTACCTGTTGATGGTTGGGCTGGGAATTCTGGTGGAAGGCAATCTTACTGA 966 0.5 MAACCPLYLSLSFPSNLIPLIHFLCSTELISLCFSIRFQSFVCMAGIDLGSASHFLHHHRLQRPDLEDDENQHDQDNNNNVNNHEGLELVTTNQGPGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEEESMQMQQGQSSAGGGGGGGGGSGSGGGVSNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00708 321 CDD DUF296 130 205 IPR005175 -
Vimu6g00708 321 MobiDBLite consensus disorder prediction 67 119 - -
Vimu6g00708 321 MobiDBLite consensus disorder prediction 278 292 - -
Vimu6g00708 321 SUPERFAMILY AF0104/ALDC/Ptd012-like 126 259 - -
Vimu6g00708 321 MobiDBLite consensus disorder prediction 254 299 - -
Vimu6g00708 321 Pfam Plants and Prokaryotes Conserved (PCC) domain 130 243 IPR005175 -
Vimu6g00708 321 ProSiteProfiles PPC domain profile profile. 126 263 IPR005175 -
Vimu6g00708 321 FunFam AT-hook motif nuclear-localized protein 129 256 - -
Vimu6g00708 321 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 71 279 IPR014476 GO:0003680
Vimu6g00708 321 Gene3D - 129 264 - -
Vimu6g00708 321 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00708 Vimu-Chr6 8176386 8177501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00708 44 318 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 62.914 1.63e-95 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00708 - - vra:106758954 534.643